A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8155.2
nTPM
Monaco:
1856.9
nTPM
Schmiedel:
643.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8155.2
HPA sample
nTPM
Memory B-cell nTPM: 8155.2
Samples: 6
Max nTPM: 11296.1
Min nTPM: 6721.4
P10809_1017
6721.4
P10809_1025
8068.3
P10809_1044
11296.1
P10809_1063
7670.4
P10809_1092
7237.8
P10809_1105
7937.3
Naive B-cell nTPM: 7734.6
Samples: 6
Max nTPM: 11168.0
Min nTPM: 6392.1
P10809_1011
6392.1
P10809_1029
7427.2
P10809_1048
11168.0
P10809_1067
6810.6
P10809_1091
6779.0
P10809_1104
7830.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1856.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1856.9
Samples: 4
Max nTPM: 3357.7
Min nTPM: 685.1
RHH5310_R3677
1867.8
RHH5218_R3590
685.1
RHH5247_R3619
3357.7
RHH5276_R3648
1516.9
Naive B-cell nTPM: 1640.2
Samples: 4
Max nTPM: 2240.7
Min nTPM: 934.2
RHH5308_R3675
2240.7
RHH5216_R3588
934.2
RHH5245_R3617
2100.5
RHH5274_R3646
1285.3
Non-switched memory B-cell nTPM: 1445.7
Samples: 4
Max nTPM: 2142.2
Min nTPM: 828.6
RHH5309_R3676
2142.2
RHH5217_R3589
828.6
RHH5246_R3618
1426.9
RHH5275_R3647
1385.2
Plasmablast nTPM: 1614.2
Samples: 4
Max nTPM: 1990.1
Min nTPM: 999.4
RHH5312_R3679
1990.1
RHH5220_R3592
999.4
RHH5249_R3621
1906.1
RHH5278_R3650
1561.2
Switched memory B-cell nTPM: 1479.8
Samples: 4
Max nTPM: 2289.5
Min nTPM: 992.8
RHH5311_R3678
2289.5
RHH5219_R3591
1334.0
RHH5248_R3620
992.8
RHH5277_R3649
1302.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
643.1
Schmiedel sample id
TPM
Naive B-cell TPM: 643.1
Samples: 91
Max TPM: 882.0
Min TPM: 262.6
B_CELL_NAIVE_1
882.0
B_CELL_NAIVE_2
873.9
B_CELL_NAIVE_3
840.2
B_CELL_NAIVE_4
809.1
B_CELL_NAIVE_5
806.2
B_CELL_NAIVE_6
805.9
B_CELL_NAIVE_7
804.4
B_CELL_NAIVE_8
803.6
B_CELL_NAIVE_9
797.0
B_CELL_NAIVE_10
795.2
B_CELL_NAIVE_11
791.9
B_CELL_NAIVE_12
788.3
B_CELL_NAIVE_13
786.8
B_CELL_NAIVE_14
783.9
B_CELL_NAIVE_15
781.9
B_CELL_NAIVE_16
775.1
B_CELL_NAIVE_17
768.5
B_CELL_NAIVE_18
755.8
B_CELL_NAIVE_19
753.7
B_CELL_NAIVE_20
752.0
B_CELL_NAIVE_21
748.1
B_CELL_NAIVE_22
740.0
B_CELL_NAIVE_23
737.6
B_CELL_NAIVE_24
737.6
B_CELL_NAIVE_25
734.9
B_CELL_NAIVE_26
729.9
B_CELL_NAIVE_27
726.5
B_CELL_NAIVE_28
725.3
B_CELL_NAIVE_29
724.1
B_CELL_NAIVE_30
719.0
B_CELL_NAIVE_31
718.1
B_CELL_NAIVE_32
710.0
B_CELL_NAIVE_33
706.4
B_CELL_NAIVE_34
705.2
B_CELL_NAIVE_35
701.2
B_CELL_NAIVE_36
693.1
B_CELL_NAIVE_37
693.0
B_CELL_NAIVE_38
685.4
B_CELL_NAIVE_39
683.2
B_CELL_NAIVE_40
681.2
B_CELL_NAIVE_41
681.2
B_CELL_NAIVE_42
680.6
B_CELL_NAIVE_43
677.1
B_CELL_NAIVE_44
672.1
B_CELL_NAIVE_45
665.2
B_CELL_NAIVE_46
664.8
B_CELL_NAIVE_47
662.3
B_CELL_NAIVE_48
662.2
B_CELL_NAIVE_49
661.5
B_CELL_NAIVE_50
659.7
B_CELL_NAIVE_51
652.0
B_CELL_NAIVE_52
650.4
B_CELL_NAIVE_53
644.9
B_CELL_NAIVE_54
638.1
B_CELL_NAIVE_55
634.2
B_CELL_NAIVE_56
633.3
B_CELL_NAIVE_57
629.6
B_CELL_NAIVE_58
625.9
B_CELL_NAIVE_59
625.0
B_CELL_NAIVE_60
620.1
B_CELL_NAIVE_61
618.7
B_CELL_NAIVE_62
614.2
B_CELL_NAIVE_63
614.0
B_CELL_NAIVE_64
609.8
B_CELL_NAIVE_65
606.4
B_CELL_NAIVE_66
599.1
B_CELL_NAIVE_67
589.8
B_CELL_NAIVE_68
589.7
B_CELL_NAIVE_69
588.0
B_CELL_NAIVE_70
579.5
B_CELL_NAIVE_71
578.1
B_CELL_NAIVE_72
570.6
B_CELL_NAIVE_73
564.5
B_CELL_NAIVE_74
543.1
B_CELL_NAIVE_75
542.3
B_CELL_NAIVE_76
530.3
B_CELL_NAIVE_77
513.5
B_CELL_NAIVE_78
497.0
B_CELL_NAIVE_79
478.0
B_CELL_NAIVE_80
462.9
B_CELL_NAIVE_81
458.4
B_CELL_NAIVE_82
457.3
B_CELL_NAIVE_83
430.0
B_CELL_NAIVE_84
414.9
B_CELL_NAIVE_85
361.4
B_CELL_NAIVE_86
340.8
B_CELL_NAIVE_87
318.8
B_CELL_NAIVE_88
310.9
B_CELL_NAIVE_89
300.5
B_CELL_NAIVE_90
283.3
B_CELL_NAIVE_91
262.6
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