A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4400.7
nTPM
Monaco:
1170.3
nTPM
Schmiedel:
433.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4400.7
HPA sample
nTPM
Classical monocyte nTPM: 4400.7
Samples: 6
Max nTPM: 9512.9
Min nTPM: 2615.4
P10809_1003
9512.9
P10809_1020
3322.0
P10809_1039
4056.7
P10809_1058
2988.0
P10809_1080
2615.4
P10809_1107
3909.2
Intermediate monocyte nTPM: 3604.2
Samples: 6
Max nTPM: 4755.2
Min nTPM: 2597.6
P10809_1004
3523.9
P10809_1023
4312.3
P10809_1042
3759.8
P10809_1061
2597.6
P10809_1081
2676.5
P10809_1108
4755.2
Non-classical monocyte nTPM: 3292.3
Samples: 5
Max nTPM: 4130.5
Min nTPM: 2511.5
P10809_1005
4100.3
P10809_1053
3090.2
P10809_1072
2629.1
P10809_1082
2511.5
P10809_1109
4130.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1170.3
Monaco sample
nTPM
Classical monocyte nTPM: 806.2
Samples: 4
Max nTPM: 927.7
Min nTPM: 510.6
RHH5313_R3680
901.3
RHH5221_R3593
510.6
RHH5250_R3622
885.2
RHH5279_R3651
927.7
Intermediate monocyte nTPM: 1170.3
Samples: 4
Max nTPM: 1395.1
Min nTPM: 1012.5
RHH5314_R3681
1395.1
RHH5222_R3594
1012.5
RHH5251_R3623
1158.8
RHH5280_R3652
1114.7
Non-classical monocyte nTPM: 843.4
Samples: 4
Max nTPM: 1101.4
Min nTPM: 718.9
RHH5315_R3682
1101.4
RHH5223_R3595
718.9
RHH5252_R3624
805.6
RHH5281_R3653
747.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
433.0
Schmiedel sample id
TPM
Classical monocyte TPM: 396.6
Samples: 91
Max TPM: 493.3
Min TPM: 278.6
MONOCYTES_1
493.3
MONOCYTES_2
488.6
MONOCYTES_3
481.0
MONOCYTES_4
467.3
MONOCYTES_5
466.6
MONOCYTES_6
461.3
MONOCYTES_7
460.9
MONOCYTES_8
456.2
MONOCYTES_9
451.6
MONOCYTES_10
451.4
MONOCYTES_11
450.2
MONOCYTES_12
449.7
MONOCYTES_13
449.2
MONOCYTES_14
446.0
MONOCYTES_15
444.9
MONOCYTES_16
441.9
MONOCYTES_17
440.4
MONOCYTES_18
432.0
MONOCYTES_19
431.5
MONOCYTES_20
430.9
MONOCYTES_21
429.4
MONOCYTES_22
428.4
MONOCYTES_23
427.2
MONOCYTES_24
426.9
MONOCYTES_25
425.6
MONOCYTES_26
423.0
MONOCYTES_27
420.0
MONOCYTES_28
419.4
MONOCYTES_29
418.8
MONOCYTES_30
418.2
MONOCYTES_31
417.0
MONOCYTES_32
416.3
MONOCYTES_33
416.1
MONOCYTES_34
416.1
MONOCYTES_35
411.9
MONOCYTES_36
411.1
MONOCYTES_37
411.0
MONOCYTES_38
410.6
MONOCYTES_39
409.6
MONOCYTES_40
409.0
MONOCYTES_41
408.7
MONOCYTES_42
407.7
MONOCYTES_43
405.8
MONOCYTES_44
404.7
MONOCYTES_45
404.1
MONOCYTES_46
403.8
MONOCYTES_47
403.8
MONOCYTES_48
402.4
MONOCYTES_49
402.3
MONOCYTES_50
401.8
MONOCYTES_51
398.2
MONOCYTES_52
396.3
MONOCYTES_53
396.3
MONOCYTES_54
396.1
MONOCYTES_55
395.9
MONOCYTES_56
395.2
MONOCYTES_57
394.7
MONOCYTES_58
390.6
MONOCYTES_59
386.4
MONOCYTES_60
386.0
MONOCYTES_61
384.1
MONOCYTES_62
378.9
MONOCYTES_63
378.9
MONOCYTES_64
375.6
MONOCYTES_65
375.0
MONOCYTES_66
374.6
MONOCYTES_67
373.4
MONOCYTES_68
371.9
MONOCYTES_69
369.8
MONOCYTES_70
368.4
MONOCYTES_71
367.5
MONOCYTES_72
365.4
MONOCYTES_73
363.9
MONOCYTES_74
361.6
MONOCYTES_75
345.5
MONOCYTES_76
344.8
MONOCYTES_77
339.1
MONOCYTES_78
337.0
MONOCYTES_79
336.9
MONOCYTES_80
336.0
MONOCYTES_81
331.0
MONOCYTES_82
326.8
MONOCYTES_83
320.9
MONOCYTES_84
315.9
MONOCYTES_85
314.8
MONOCYTES_86
312.8
MONOCYTES_87
308.4
MONOCYTES_88
305.2
MONOCYTES_89
300.0
MONOCYTES_90
286.8
MONOCYTES_91
278.6
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Non-classical monocyte TPM: 432.9
Samples: 90
Max TPM: 577.9
Min TPM: 222.6
M2_1
577.9
M2_2
548.6
M2_3
534.8
M2_4
529.4
M2_5
523.1
M2_6
517.1
M2_7
514.5
M2_8
509.1
M2_9
504.0
M2_10
503.1
M2_11
502.0
M2_12
501.9
M2_13
497.8
M2_14
497.3
M2_15
497.3
M2_16
495.0
M2_17
492.4
M2_18
487.0
M2_19
486.7
M2_20
485.3
M2_21
483.5
M2_22
481.5
M2_23
480.4
M2_24
480.1
M2_25
475.9
M2_26
474.4
M2_27
473.1
M2_28
472.3
M2_29
472.2
M2_30
471.2
M2_31
471.2
M2_32
469.2
M2_33
468.7
M2_34
468.5
M2_35
467.3
M2_36
466.6
M2_37
465.6
M2_38
465.3
M2_39
462.8
M2_40
462.2
M2_41
462.1
M2_42
460.3
M2_43
459.1
M2_44
459.1
M2_45
458.5
M2_46
457.3
M2_47
456.1
M2_48
452.8
M2_49
451.6
M2_50
446.5
M2_51
446.3
M2_52
441.8
M2_53
441.3
M2_54
441.2
M2_55
436.5
M2_56
436.0
M2_57
428.0
M2_58
416.6
M2_59
416.4
M2_60
411.9
M2_61
409.4
M2_62
408.6
M2_63
408.2
M2_64
405.6
M2_65
402.8
M2_66
402.0
M2_67
397.6
M2_68
396.7
M2_69
392.4
M2_70
391.3
M2_71
384.8
M2_72
379.1
M2_73
376.9
M2_74
376.1
M2_75
356.5
M2_76
355.8
M2_77
354.6
M2_78
352.2
M2_79
340.7
M2_80
330.9
M2_81
329.9
M2_82
310.2
M2_83
303.4
M2_84
299.8
M2_85
295.7
M2_86
291.1
M2_87
273.9
M2_88
270.7
M2_89
230.3
M2_90
222.6
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