A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5174.5
nTPM
Monaco:
681.7
nTPM
Schmiedel:
505.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5174.5
HPA sample
nTPM
NK-cell nTPM: 5174.5
Samples: 6
Max nTPM: 6213.4
Min nTPM: 3170.5
P10809_1013
4377.8
P10809_1033
6072.6
P10809_1052
5036.4
P10809_1071
6176.2
P10809_1093
3170.5
P10809_1103
6213.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
681.7
Monaco sample
nTPM
NK-cell nTPM: 681.7
Samples: 4
Max nTPM: 911.5
Min nTPM: 541.6
RHH5316_R3683
911.5
RHH5224_R3596
566.1
RHH5253_R3625
541.6
RHH5282_R3654
707.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
505.4
Schmiedel sample id
TPM
NK-cell TPM: 505.3
Samples: 90
Max TPM: 762.7
Min TPM: 284.2
NK_1
762.7
NK_2
652.5
NK_3
647.7
NK_4
641.5
NK_5
621.1
NK_6
611.6
NK_7
605.1
NK_8
599.7
NK_9
597.8
NK_10
594.9
NK_11
590.3
NK_12
588.7
NK_13
587.4
NK_14
584.2
NK_15
582.3
NK_16
582.0
NK_17
576.3
NK_18
576.0
NK_19
573.4
NK_20
569.6
NK_21
562.5
NK_22
561.6
NK_23
559.6
NK_24
558.1
NK_25
556.8
NK_26
553.9
NK_27
553.9
NK_28
552.4
NK_29
546.6
NK_30
546.6
NK_31
541.0
NK_32
539.5
NK_33
539.2
NK_34
537.6
NK_35
537.0
NK_36
535.5
NK_37
535.2
NK_38
533.9
NK_39
532.2
NK_40
529.4
NK_41
528.5
NK_42
525.9
NK_43
524.1
NK_44
515.0
NK_45
514.6
NK_46
514.4
NK_47
511.6
NK_48
508.9
NK_49
507.7
NK_50
506.4
NK_51
495.8
NK_52
493.6
NK_53
493.5
NK_54
490.4
NK_55
487.7
NK_56
485.2
NK_57
479.5
NK_58
478.6
NK_59
477.7
NK_60
475.7
NK_61
474.6
NK_62
474.1
NK_63
473.5
NK_64
473.5
NK_65
467.2
NK_66
466.7
NK_67
463.5
NK_68
462.5
NK_69
455.5
NK_70
453.6
NK_71
452.8
NK_72
452.0
NK_73
440.6
NK_74
436.2
NK_75
428.6
NK_76
425.3
NK_77
422.2
NK_78
418.6
NK_79
399.3
NK_80
390.1
NK_81
382.0
NK_82
376.7
NK_83
373.8
NK_84
370.6
NK_85
367.9
NK_86
365.3
NK_87
329.4
NK_88
328.7
NK_89
300.4
NK_90
284.2
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