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BETA
  • SUMMARY

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  • RPL7
EVOLUTIONARY MEDULLA OBLONGATA Show tissue menu
BRAIN43 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CORPUS CALLOSUM DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX HIPPOCAMPAL FORMATION
HYPOTHALAMUS INSULAR CORTEX MEDULLA OBLONGATA MIDBRAIN MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OLFACTORY BULB PERIAQUEDUCTAL GRAY PONS PREFRONTAL CORTEX PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:508.4 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Mouse:174.9 nTPM
Rat:13.5 nTPM
Pig:523.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

508.4
Sample id Sample description nTPM
Area postrema
nTPM: 429.4
2799 Male, age 61, both hemispheres 511.5
2306 Male, age 80, both hemispheres 450.0
2054 Male, age 76, both hemispheres 326.7
Dorsal medullary reticular nucleus
nTPM: 389.0
2373 Male, age 61, both hemispheres 414.3
2040 Female, age 85, both hemispheres 401.9
2088 Male, age 76, both hemispheres 350.8
Dorsal motor vagal complex
nTPM: 407.0
2797 Male, age 61, both hemispheres 574.3
2133 Female, age 91, both hemispheres 435.7
2807 Female, age 85, both hemispheres 433.2
2643 Male, age 74, both hemispheres 416.7
2000 Male, age 74, unknown 378.7
2844 Male, age 55, unknown 372.1
2813 Female, age 72, unknown 334.2
2185 Male, age 76, both hemispheres 310.7
Gigantocellular reticular nuclei, medullary
nTPM: 409.0
2314 Male, age 61, both hemispheres 456.1
2387 Female, age 91, both hemispheres 445.7
1876 Female, age 85, both hemispheres 428.7
2310 Male, age 80, both hemispheres 394.0
2022 Male, age 76, right hemisphere 378.5
2462 Male, age 74, both hemispheres 351.0
Gigantocellular reticular nuclei, pars
nTPM: 379.3
2084 Female, age 85, both hemispheres 417.6
2168 Male, age 76, both hemispheres 405.7
2706 Male, age 80, both hemispheres 375.8
2336 Male, age 61, both hemispheres 354.0
2330 Male, age 80, both hemispheres 343.4
Inferior olive
nTPM: 446.8
2178 Male, age 61, both hemispheres 478.0
2379 Male, age 80, both hemispheres 470.5
2563 Male, age 74, both hemispheres 457.6
2085 Female, age 85, both hemispheres 430.1
2628 Female, age 91, both hemispheres 398.0
Lateral medullary reticular nucleus
nTPM: 439.0
2305 Male, age 74, both hemispheres 492.7
2852 Male, age 80, both hemispheres 483.3
2190 Female, age 85, both hemispheres 455.8
2804 Female, age 91, both hemispheres 447.3
2374 Male, age 61, both hemispheres 398.4
2044 Male, age 76, both hemispheres 356.1
Medial olivary nucleus
nTPM: 508.4
1943 Male, age 61, both hemispheres 576.0
1962 Male, age 76, both hemispheres 527.7
2138 Female, age 91, both hemispheres 482.1
2851 Male, age 80, both hemispheres 447.9
Medial vestibular nucleus
nTPM: 409.7
2803 Female, age 91, both hemispheres 508.1
2801 Male, age 74, both hemispheres 435.3
2093 Male, age 80, both hemispheres 425.6
2743 Female, age 85, both hemispheres 371.6
2624 Male, age 61, both hemispheres 368.7
2134 Male, age 76, both hemispheres 348.8
Motor hypoglossal nucleus
nTPM: 368.9
2132 Female, age 85, both hemispheres 490.8
2125 Female, age 91, both hemispheres 467.4
2182 Male, age 80, both hemispheres 360.1
2461 Male, age 61, both hemispheres 264.1
2277 Male, age 76, both hemispheres 262.3
Nucleus ambiguus
nTPM: 401.9
2071 Male, age 76, both hemispheres 494.2
2096 Female, age 85, both hemispheres 309.6
Nucleus cuneatus
nTPM: 392.3
2380 Male, age 80, both hemispheres 482.8
2808 Female, age 85, both hemispheres 458.1
2376 Male, age 61, both hemispheres 432.4
2805 Female, age 91, both hemispheres 414.9
2564 Male, age 74, both hemispheres 394.2
2381 Male, age 80, both hemispheres 375.1
2562 Male, age 61, both hemispheres 347.9
2100 Male, age 76, both hemispheres 326.0
2131 Male, age 76, both hemispheres 299.1
Nucleus gracilis
nTPM: 417.3
2382 Male, age 80, both hemispheres 447.7
2627 Male, age 74, both hemispheres 422.2
2299 Female, age 85, both hemispheres 382.1
Nucleus raphe obscurus
nTPM: 487.1
2845 Female, age 85, midline 505.1
2142 Male, age 76, midline 492.0
2800 Male, age 61, midline 464.2
Nucleus raphe pallidus
nTPM: 491.5
1924 Male, age 61, midline 574.1
2145 Male, age 76, midline 475.8
2183 Male, age 80, midline 424.6
Nucleus tractus solitarii
nTPM: 374.1
2144 Female, age 91, right hemisphere 555.6
2191 Female, age 85, both hemispheres 368.9
2656 Male, age 76, both hemispheres 307.4
2307 Male, age 80, both hemispheres 264.6
Parvicellular reticular nuclei
nTPM: 384.6
2095 Male, age 76, both hemispheres 426.8
2119 Male, age 80, both hemispheres 411.4
2558 Male, age 74, both hemispheres 315.5
Parvicellular reticular nuclei, medullary
nTPM: 393.2
2189 Female, age 91, both hemispheres 405.4
2091 Female, age 85, both hemispheres 395.3
2181 Male, age 80, left hemisphere 378.9
Peritrigeminal nucleus
nTPM: 458.6
2067 Female, age 85, both hemispheres 510.3
2136 Male, age 76, both hemispheres 467.4
2179 Male, age 61, both hemispheres 398.2
Prepositus hypoglossal nucleus
nTPM: 454.5
2855 Female, age 85, right hemisphere 521.4
2086 Male, age 80, both hemispheres 387.7
Spinal trigeminal nucleus, caudal
nTPM: 364.0
2390 Female, age 91, both hemispheres 385.6
2312 Male, age 61, both hemispheres 381.2
2308 Male, age 80, both hemispheres 375.5
2642 Male, age 74, both hemispheres 343.9
2447 Male, age 76, both hemispheres 333.9
Spinal trigeminal nucleus, interpolar
nTPM: 390.8
2033 Male, age 80, both hemispheres 410.6
2389 Female, age 91, both hemispheres 408.4
2066 Male, age 76, right hemisphere 396.0
2386 Female, age 85, both hemispheres 389.9
2625 Male, age 61, both hemispheres 349.2
Spinal vestibular nucleus
nTPM: 462.1
2384 Male, age 74, both hemispheres 535.3
2806 Female, age 85, both hemispheres 500.1
2780 Male, age 80, both hemispheres 451.9
2186 Female, age 91, both hemispheres 448.7
2796 Male, age 61, both hemispheres 435.3
2748 Male, age 76, both hemispheres 401.3
Superior vestibular nucleus
nTPM: 460.3
2383 Male, age 74, both hemispheres 519.5
2015 Male, age 80, both hemispheres 472.1
2061 Male, age 76, both hemispheres 389.2
Ventral medullary reticular nucleus
nTPM: 423.4
2372 Male, age 61, both hemispheres 470.6
2060 Male, age 76, both hemispheres 376.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 439.5
2118 Male, age 80, both hemispheres 521.1
2302 Female, age 91, both hemispheres 453.6
2741 Female, age 85, both hemispheres 414.1
1986 Male, age 76, both hemispheres 407.0
2180 Male, age 61, both hemispheres 401.5

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 2.7
FF:10155-103A2 76 years, female 4.4
FF:10038-101F2 18-64 years, mixed 2.4
FF:10174-103C3 60 years, female 1.4

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

523.1
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 523.1
Samples: 4

Max nTPM: 638.9
Min nTPM: 426.4
Sample A Female 451.7
Sample B Female 426.4
Sample C Male 575.3
Sample D Male 638.9

MEDULLA OBLONGATA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

174.9
Mouse sample Sample description nTPM
Medulla oblongata
nTPM: 174.9
Samples: 4

Max nTPM: 204.8
Min nTPM: 141.5
Sample A 204.8
Sample B 141.5
Sample C 184.4
Sample D 168.7

MEDULLA OBLONGATA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.5
Rat sample Sample description nTPM
Medulla oblongata
nTPM: 13.5
Samples: 4

Max nTPM: 14.8
Min nTPM: 12.4
Sample A 12.4
Sample A 14.8
Sample A 13.9
Sample A 12.8

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