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BETA
  • SUMMARY

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  • EVOLUTION

  • RPL7
EVOLUTIONARY RETINA Show tissue menu
BRAIN43 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES6
Select an organ to show its tissues
AMYGDALA BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CORPUS CALLOSUM DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX HIPPOCAMPAL FORMATION
HYPOTHALAMUS INSULAR CORTEX MEDULLA OBLONGATA MIDBRAIN MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OLFACTORY BULB PERIAQUEDUCTAL GRAY PONS PREFRONTAL CORTEX PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Eye
Evolutionary methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:823.5 nTPM
GTEx:823.5 nTPM
FANTOM5:2.9 Scaled Tags Per Million
Mouse:388.4 nTPM
Rat:14.4 nTPM
Pig:197.1 nTPM
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

823.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 823.5
Samples: 105

Max nTPM: 1423.5
Min nTPM: 517.2
Std nTPM: 164.6
Median nTPM:
491_1 89 years, female 1423.5
495_1 57 years, female 1214.9
308_1 70 years, female 1127.1
35_1 74 years, female 1120.5
139_1 64 years, female 1108.7
414_1 84 years, female 1079.8
137_1 83 years, male 1057.5
120_1 70 years, female 1049.9
17_1 71 years, male 1048.9
384_1 83 years, male 1045.4
307_1 66 years, female 1041.1
315_1 62 years, female 1039.4
126_1 63 years, male 1039.0
4_1 88 years, female 1035.6
490_1 67 years, female 1033.9
89_1 63 years, male 1011.6
413_1 59 years, female 1007.1
153_1 70 years, female 1000.8
145_1 84 years, male 998.8
162_1 79 years, female 996.6
119_1 70 years, female 996.0
379_1 60 years, male 978.7
501_1 88 years, male 944.6
376_1 75 years, female 942.4
311_1 78 years, male 940.4
389_1 86 years, female 924.4
42_1 85 years, male 922.1
321_1 62 years, female 920.6
142_1 61 years, female 919.7
322_1 76 years, male 916.2
246_1 77 years, male 910.3
415_1 77 years, female 908.3
189_1 76 years, male 908.2
466_1 57 years, female 889.9
81_1 67 years, male 888.2
452_1 88 years, female 875.4
149_1 88 years, male 868.0
2_1 77 years, female 861.3
43_1 64 years, female 852.7
377_1 82 years, female 852.1
117_1 61 years, male 851.1
217_1 76 years, male 849.4
41_1 94 years, female 846.1
237_1 82 years, male 840.0
173_1 67 years, male 839.4
396_1 62 years, male 833.1
375_1 74 years, female 825.7
109_1 81 years, female 824.5
314_1 67 years, male 818.8
18_1 88 years, male 815.4
265_1 87 years, male 814.4
288_1 66 years, female 811.0
526_1 61 years, male 809.6
348_1 84 years, male 809.2
404_1 82 years, female 806.1
447_1 81 years, male 798.8
518_1 75 years, female 782.8
320_1 89 years, female 781.9
266_1 85 years, male 781.1
254_1 77 years, female 780.7
218_1 71 years, female 780.3
324_1 76 years, male 779.3
499_1 55 years, female 777.5
6_1 73 years, female 772.6
394_1 75 years, female 760.6
32_1 67 years, male 758.8
313_1 79 years, female 758.6
229_1 69 years, female 754.0
355_1 70 years, female 753.9
99_1 64 years, male 753.7
347_1 72 years, male 745.9
405_1 91 years, male 739.2
386_1 76 years, male 734.0
115_1 83 years, male 733.9
319_1 81 years, male 731.6
351_1 91 years, male 730.8
468_1 89 years, male 715.1
243_1 75 years, male 714.0
317_1 60 years, male 711.4
264_1 73 years, female 705.7
291_1 76 years, male 700.6
177_1 74 years, male 692.3
406_1 79 years, male 691.0
295_1 61 years, female 682.7
335_1 73 years, female 681.5
9_1 66 years, female 667.2
316_1 62 years, male 664.5
251_1 78 years, male 661.0
480_1 63 years, male 658.0
349_1 83 years, male 637.0
503_1 68 years, male 623.6
318_1 68 years, male 620.6
354_1 81 years, female 618.0
292_1 71 years, male 611.9
425_1 59 years, female 610.4
286_1 68 years, female 605.7
172_1 72 years, female 602.6
293_1 68 years, female 600.5
353_1 82 years, female 595.4
352_1 62 years, male 593.2
506_1 65 years, male 563.0
350_1 84 years, female 556.8
517_1 88 years, male 550.4
356_1 87 years, female 534.8
163_1 78 years, male 517.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 2.9
FF:10030-101E3 24-65 years, mixed 2.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

197.1
Pig sample Sample description nTPM
Retina
nTPM: 197.1
Samples: 4

Max nTPM: 224.4
Min nTPM: 185.2
Sample A Female 187.8
Sample B Female 191.0
Sample C Male 224.4
Sample D Male 185.2

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

388.4
Mouse sample Sample description nTPM
Retina
nTPM: 388.4
Samples: 3

Max nTPM: 443.9
Min nTPM: 289.1
Sample D 432.2
Sample B 289.1
Sample C 443.9

RETINA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.4
Rat sample Sample description nTPM
Retina
nTPM: 14.4
Samples: 4

Max nTPM: 16.0
Min nTPM: 13.4
Sample B 13.4
Sample A 13.5
Sample A 14.5
Sample A 16.0

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