A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14399.7
nTPM
Monaco:
2547.3
nTPM
Schmiedel:
93.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14399.7
HPA sample
nTPM
Memory B-cell nTPM: 14399.7
Samples: 6
Max nTPM: 26261.8
Min nTPM: 5757.0
P10809_1017
5757.0
P10809_1025
14543.6
P10809_1044
26261.8
P10809_1063
14260.0
P10809_1092
12623.3
P10809_1105
12952.3
Naive B-cell nTPM: 12255.8
Samples: 6
Max nTPM: 23475.5
Min nTPM: 4401.8
P10809_1011
4401.8
P10809_1029
10715.6
P10809_1048
23475.5
P10809_1067
11750.2
P10809_1091
11284.6
P10809_1104
11907.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2547.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 2547.3
Samples: 4
Max nTPM: 5488.9
Min nTPM: 1104.7
RHH5310_R3677
2237.2
RHH5218_R3590
1104.7
RHH5247_R3619
5488.9
RHH5276_R3648
1358.5
Naive B-cell nTPM: 1960.5
Samples: 4
Max nTPM: 2384.1
Min nTPM: 1577.7
RHH5308_R3675
2384.1
RHH5216_R3588
1926.0
RHH5245_R3617
1954.1
RHH5274_R3646
1577.7
Non-switched memory B-cell nTPM: 2189.7
Samples: 4
Max nTPM: 3453.0
Min nTPM: 1451.7
RHH5309_R3676
2315.7
RHH5217_R3589
1451.7
RHH5246_R3618
3453.0
RHH5275_R3647
1538.5
Plasmablast nTPM: 1722.6
Samples: 4
Max nTPM: 2181.8
Min nTPM: 1459.3
RHH5312_R3679
1770.2
RHH5220_R3592
1459.3
RHH5249_R3621
2181.8
RHH5278_R3650
1478.9
Switched memory B-cell nTPM: 2137.8
Samples: 4
Max nTPM: 3363.8
Min nTPM: 1455.1
RHH5311_R3678
3363.8
RHH5219_R3591
2144.0
RHH5248_R3620
1588.2
RHH5277_R3649
1455.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.3
Schmiedel sample id
TPM
Naive B-cell TPM: 93.3
Samples: 91
Max TPM: 160.7
Min TPM: 50.7
B_CELL_NAIVE_1
160.7
B_CELL_NAIVE_2
149.2
B_CELL_NAIVE_3
138.0
B_CELL_NAIVE_4
131.6
B_CELL_NAIVE_5
123.8
B_CELL_NAIVE_6
120.3
B_CELL_NAIVE_7
118.9
B_CELL_NAIVE_8
116.2
B_CELL_NAIVE_9
111.1
B_CELL_NAIVE_10
111.0
B_CELL_NAIVE_11
110.9
B_CELL_NAIVE_12
110.7
B_CELL_NAIVE_13
109.8
B_CELL_NAIVE_14
107.2
B_CELL_NAIVE_15
106.4
B_CELL_NAIVE_16
106.4
B_CELL_NAIVE_17
104.6
B_CELL_NAIVE_18
103.9
B_CELL_NAIVE_19
103.5
B_CELL_NAIVE_20
102.4
B_CELL_NAIVE_21
101.6
B_CELL_NAIVE_22
101.5
B_CELL_NAIVE_23
100.5
B_CELL_NAIVE_24
100.3
B_CELL_NAIVE_25
100.2
B_CELL_NAIVE_26
99.0
B_CELL_NAIVE_27
98.8
B_CELL_NAIVE_28
98.5
B_CELL_NAIVE_29
97.8
B_CELL_NAIVE_30
95.9
B_CELL_NAIVE_31
95.0
B_CELL_NAIVE_32
94.5
B_CELL_NAIVE_33
94.4
B_CELL_NAIVE_34
94.0
B_CELL_NAIVE_35
94.0
B_CELL_NAIVE_36
93.8
B_CELL_NAIVE_37
93.5
B_CELL_NAIVE_38
93.4
B_CELL_NAIVE_39
92.8
B_CELL_NAIVE_40
91.8
B_CELL_NAIVE_41
91.7
B_CELL_NAIVE_42
91.6
B_CELL_NAIVE_43
91.4
B_CELL_NAIVE_44
90.7
B_CELL_NAIVE_45
90.1
B_CELL_NAIVE_46
90.0
B_CELL_NAIVE_47
89.9
B_CELL_NAIVE_48
89.7
B_CELL_NAIVE_49
89.5
B_CELL_NAIVE_50
88.4
B_CELL_NAIVE_51
88.4
B_CELL_NAIVE_52
88.1
B_CELL_NAIVE_53
87.6
B_CELL_NAIVE_54
87.4
B_CELL_NAIVE_55
87.3
B_CELL_NAIVE_56
86.7
B_CELL_NAIVE_57
86.3
B_CELL_NAIVE_58
85.7
B_CELL_NAIVE_59
85.6
B_CELL_NAIVE_60
85.4
B_CELL_NAIVE_61
85.3
B_CELL_NAIVE_62
85.2
B_CELL_NAIVE_63
84.7
B_CELL_NAIVE_64
84.6
B_CELL_NAIVE_65
84.2
B_CELL_NAIVE_66
84.0
B_CELL_NAIVE_67
83.9
B_CELL_NAIVE_68
83.7
B_CELL_NAIVE_69
83.6
B_CELL_NAIVE_70
83.2
B_CELL_NAIVE_71
83.1
B_CELL_NAIVE_72
82.6
B_CELL_NAIVE_73
81.8
B_CELL_NAIVE_74
81.4
B_CELL_NAIVE_75
80.3
B_CELL_NAIVE_76
80.1
B_CELL_NAIVE_77
80.1
B_CELL_NAIVE_78
80.1
B_CELL_NAIVE_79
78.7
B_CELL_NAIVE_80
78.3
B_CELL_NAIVE_81
78.1
B_CELL_NAIVE_82
77.9
B_CELL_NAIVE_83
77.6
B_CELL_NAIVE_84
76.0
B_CELL_NAIVE_85
74.6
B_CELL_NAIVE_86
73.7
B_CELL_NAIVE_87
73.7
B_CELL_NAIVE_88
72.8
B_CELL_NAIVE_89
70.6
B_CELL_NAIVE_90
70.5
B_CELL_NAIVE_91
50.7
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The Human Protein Atlas project is funded
