A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9266.0
nTPM
Monaco:
846.2
nTPM
Schmiedel:
61.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9266.0
HPA sample
nTPM
NK-cell nTPM: 9266.0
Samples: 6
Max nTPM: 12009.6
Min nTPM: 4255.1
P10809_1013
4255.1
P10809_1033
11904.3
P10809_1052
9433.0
P10809_1071
12009.6
P10809_1093
6544.5
P10809_1103
11449.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
846.2
Monaco sample
nTPM
NK-cell nTPM: 846.2
Samples: 4
Max nTPM: 966.7
Min nTPM: 632.5
RHH5316_R3683
966.7
RHH5224_R3596
832.8
RHH5253_R3625
632.5
RHH5282_R3654
952.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.3
Schmiedel sample id
TPM
NK-cell TPM: 61.3
Samples: 90
Max TPM: 100.1
Min TPM: 42.0
NK_1
100.1
NK_2
86.9
NK_3
86.1
NK_4
84.7
NK_5
83.2
NK_6
82.4
NK_7
81.7
NK_8
79.7
NK_9
79.3
NK_10
78.7
NK_11
77.3
NK_12
75.5
NK_13
74.1
NK_14
72.8
NK_15
72.7
NK_16
71.3
NK_17
71.0
NK_18
70.6
NK_19
70.3
NK_20
67.3
NK_21
66.7
NK_22
64.7
NK_23
64.5
NK_24
64.4
NK_25
64.1
NK_26
63.9
NK_27
63.4
NK_28
63.1
NK_29
63.0
NK_30
62.2
NK_31
62.1
NK_32
62.0
NK_33
61.7
NK_34
61.4
NK_35
61.3
NK_36
61.2
NK_37
61.2
NK_38
61.2
NK_39
61.0
NK_40
61.0
NK_41
60.8
NK_42
60.4
NK_43
60.1
NK_44
59.9
NK_45
59.9
NK_46
59.9
NK_47
59.7
NK_48
59.1
NK_49
59.0
NK_50
58.9
NK_51
58.7
NK_52
58.6
NK_53
58.5
NK_54
58.1
NK_55
58.1
NK_56
57.5
NK_57
57.3
NK_58
57.1
NK_59
56.3
NK_60
56.0
NK_61
55.8
NK_62
55.5
NK_63
55.4
NK_64
55.3
NK_65
54.9
NK_66
54.6
NK_67
54.3
NK_68
54.3
NK_69
54.2
NK_70
54.0
NK_71
53.3
NK_72
53.2
NK_73
52.4
NK_74
52.1
NK_75
51.5
NK_76
51.2
NK_77
51.1
NK_78
50.6
NK_79
50.5
NK_80
48.4
NK_81
48.0
NK_82
47.6
NK_83
47.5
NK_84
47.0
NK_85
46.2
NK_86
46.0
NK_87
45.7
NK_88
45.6
NK_89
44.2
NK_90
42.0
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