A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
626.5
nTPM
Monaco:
513.3
nTPM
Schmiedel:
696.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
626.5
HPA sample
nTPM
Memory B-cell nTPM: 626.5
Samples: 6
Max nTPM: 648.0
Min nTPM: 573.2
P10809_1017
640.7
P10809_1025
646.1
P10809_1044
616.0
P10809_1063
573.2
P10809_1092
635.1
P10809_1105
648.0
Naive B-cell nTPM: 546.4
Samples: 6
Max nTPM: 606.8
Min nTPM: 489.2
P10809_1011
530.0
P10809_1029
579.2
P10809_1048
547.1
P10809_1067
526.4
P10809_1091
489.2
P10809_1104
606.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
513.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 407.9
Samples: 4
Max nTPM: 538.9
Min nTPM: 256.1
RHH5310_R3677
538.9
RHH5218_R3590
256.1
RHH5247_R3619
482.9
RHH5276_R3648
353.5
Naive B-cell nTPM: 454.2
Samples: 4
Max nTPM: 737.6
Min nTPM: 305.0
RHH5308_R3675
737.6
RHH5216_R3588
305.0
RHH5245_R3617
442.1
RHH5274_R3646
332.3
Non-switched memory B-cell nTPM: 410.8
Samples: 4
Max nTPM: 577.1
Min nTPM: 327.6
RHH5309_R3676
577.1
RHH5217_R3589
327.6
RHH5246_R3618
331.4
RHH5275_R3647
407.2
Plasmablast nTPM: 513.3
Samples: 4
Max nTPM: 623.8
Min nTPM: 409.0
RHH5312_R3679
623.8
RHH5220_R3592
409.0
RHH5249_R3621
535.2
RHH5278_R3650
485.2
Switched memory B-cell nTPM: 469.3
Samples: 4
Max nTPM: 715.1
Min nTPM: 343.2
RHH5311_R3678
715.1
RHH5219_R3591
452.8
RHH5248_R3620
366.0
RHH5277_R3649
343.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
696.3
Schmiedel sample id
TPM
Naive B-cell TPM: 696.3
Samples: 91
Max TPM: 980.8
Min TPM: 288.1
B_CELL_NAIVE_1
980.8
B_CELL_NAIVE_2
940.8
B_CELL_NAIVE_3
892.0
B_CELL_NAIVE_4
890.6
B_CELL_NAIVE_5
889.0
B_CELL_NAIVE_6
879.0
B_CELL_NAIVE_7
870.0
B_CELL_NAIVE_8
855.9
B_CELL_NAIVE_9
842.1
B_CELL_NAIVE_10
841.7
B_CELL_NAIVE_11
828.7
B_CELL_NAIVE_12
828.0
B_CELL_NAIVE_13
824.2
B_CELL_NAIVE_14
820.8
B_CELL_NAIVE_15
820.4
B_CELL_NAIVE_16
818.4
B_CELL_NAIVE_17
813.2
B_CELL_NAIVE_18
811.9
B_CELL_NAIVE_19
808.8
B_CELL_NAIVE_20
808.7
B_CELL_NAIVE_21
802.8
B_CELL_NAIVE_22
801.6
B_CELL_NAIVE_23
793.4
B_CELL_NAIVE_24
780.2
B_CELL_NAIVE_25
772.8
B_CELL_NAIVE_26
772.1
B_CELL_NAIVE_27
769.6
B_CELL_NAIVE_28
769.6
B_CELL_NAIVE_29
763.8
B_CELL_NAIVE_30
761.5
B_CELL_NAIVE_31
758.6
B_CELL_NAIVE_32
756.0
B_CELL_NAIVE_33
755.4
B_CELL_NAIVE_34
752.0
B_CELL_NAIVE_35
751.8
B_CELL_NAIVE_36
751.4
B_CELL_NAIVE_37
744.4
B_CELL_NAIVE_38
742.2
B_CELL_NAIVE_39
739.6
B_CELL_NAIVE_40
738.4
B_CELL_NAIVE_41
733.5
B_CELL_NAIVE_42
733.5
B_CELL_NAIVE_43
729.8
B_CELL_NAIVE_44
728.0
B_CELL_NAIVE_45
720.6
B_CELL_NAIVE_46
720.4
B_CELL_NAIVE_47
719.7
B_CELL_NAIVE_48
715.7
B_CELL_NAIVE_49
713.5
B_CELL_NAIVE_50
706.7
B_CELL_NAIVE_51
703.7
B_CELL_NAIVE_52
698.4
B_CELL_NAIVE_53
697.6
B_CELL_NAIVE_54
697.6
B_CELL_NAIVE_55
697.5
B_CELL_NAIVE_56
693.2
B_CELL_NAIVE_57
693.0
B_CELL_NAIVE_58
688.8
B_CELL_NAIVE_59
687.0
B_CELL_NAIVE_60
685.9
B_CELL_NAIVE_61
685.8
B_CELL_NAIVE_62
685.4
B_CELL_NAIVE_63
678.5
B_CELL_NAIVE_64
677.9
B_CELL_NAIVE_65
666.2
B_CELL_NAIVE_66
660.6
B_CELL_NAIVE_67
658.0
B_CELL_NAIVE_68
655.9
B_CELL_NAIVE_69
654.1
B_CELL_NAIVE_70
650.4
B_CELL_NAIVE_71
642.0
B_CELL_NAIVE_72
640.2
B_CELL_NAIVE_73
634.1
B_CELL_NAIVE_74
630.7
B_CELL_NAIVE_75
601.6
B_CELL_NAIVE_76
566.1
B_CELL_NAIVE_77
561.4
B_CELL_NAIVE_78
548.3
B_CELL_NAIVE_79
545.0
B_CELL_NAIVE_80
531.1
B_CELL_NAIVE_81
529.0
B_CELL_NAIVE_82
509.1
B_CELL_NAIVE_83
503.5
B_CELL_NAIVE_84
420.9
B_CELL_NAIVE_85
365.5
B_CELL_NAIVE_86
360.2
B_CELL_NAIVE_87
341.7
B_CELL_NAIVE_88
337.4
B_CELL_NAIVE_89
330.2
B_CELL_NAIVE_90
294.2
B_CELL_NAIVE_91
288.1
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