A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
434.0
nTPM
Monaco:
135.1
nTPM
Schmiedel:
538.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
434.0
HPA sample
nTPM
NK-cell nTPM: 434.0
Samples: 6
Max nTPM: 534.5
Min nTPM: 195.0
P10809_1013
432.4
P10809_1033
534.5
P10809_1052
467.0
P10809_1071
466.8
P10809_1093
195.0
P10809_1103
508.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
135.1
Monaco sample
nTPM
NK-cell nTPM: 135.1
Samples: 4
Max nTPM: 171.5
Min nTPM: 106.0
RHH5316_R3683
171.5
RHH5224_R3596
110.9
RHH5253_R3625
106.0
RHH5282_R3654
152.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
538.1
Schmiedel sample id
TPM
NK-cell TPM: 538.1
Samples: 90
Max TPM: 900.5
Min TPM: 305.1
NK_1
900.5
NK_2
717.2
NK_3
710.8
NK_4
684.2
NK_5
683.9
NK_6
680.1
NK_7
677.8
NK_8
674.4
NK_9
661.0
NK_10
658.6
NK_11
645.1
NK_12
636.6
NK_13
636.3
NK_14
632.4
NK_15
631.9
NK_16
630.6
NK_17
630.3
NK_18
626.0
NK_19
618.2
NK_20
610.4
NK_21
604.3
NK_22
602.9
NK_23
602.3
NK_24
601.0
NK_25
596.2
NK_26
595.9
NK_27
595.6
NK_28
595.2
NK_29
592.7
NK_30
592.7
NK_31
591.7
NK_32
591.1
NK_33
574.6
NK_34
574.1
NK_35
572.7
NK_36
569.2
NK_37
568.2
NK_38
565.2
NK_39
559.4
NK_40
555.3
NK_41
554.4
NK_42
553.9
NK_43
552.1
NK_44
549.2
NK_45
548.1
NK_46
543.9
NK_47
539.4
NK_48
537.7
NK_49
535.2
NK_50
532.6
NK_51
526.4
NK_52
524.6
NK_53
519.5
NK_54
518.7
NK_55
517.5
NK_56
512.6
NK_57
504.1
NK_58
500.2
NK_59
498.2
NK_60
496.7
NK_61
492.1
NK_62
488.0
NK_63
486.0
NK_64
485.5
NK_65
482.3
NK_66
478.5
NK_67
475.3
NK_68
475.3
NK_69
472.5
NK_70
469.1
NK_71
467.3
NK_72
465.5
NK_73
458.5
NK_74
457.2
NK_75
453.0
NK_76
449.4
NK_77
433.4
NK_78
412.8
NK_79
410.2
NK_80
406.1
NK_81
402.8
NK_82
397.2
NK_83
392.5
NK_84
369.8
NK_85
368.4
NK_86
356.1
NK_87
353.9
NK_88
344.6
NK_89
310.8
NK_90
305.1
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