A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
310.3
nTPM
Monaco:
298.3
nTPM
Schmiedel:
439.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
310.3
HPA sample
nTPM
Classical monocyte nTPM: 310.3
Samples: 6
Max nTPM: 606.0
Min nTPM: 194.1
P10809_1003
606.0
P10809_1020
287.1
P10809_1039
256.7
P10809_1058
221.0
P10809_1080
194.1
P10809_1107
296.9
Intermediate monocyte nTPM: 280.3
Samples: 6
Max nTPM: 364.6
Min nTPM: 193.7
P10809_1004
259.3
P10809_1023
336.6
P10809_1042
294.3
P10809_1061
233.4
P10809_1081
193.7
P10809_1108
364.6
Non-classical monocyte nTPM: 256.2
Samples: 5
Max nTPM: 328.0
Min nTPM: 161.9
P10809_1005
310.9
P10809_1053
216.7
P10809_1072
263.6
P10809_1082
161.9
P10809_1109
328.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
298.3
Monaco sample
nTPM
Classical monocyte nTPM: 272.6
Samples: 4
Max nTPM: 384.8
Min nTPM: 157.0
RHH5313_R3680
247.7
RHH5221_R3593
157.0
RHH5250_R3622
384.8
RHH5279_R3651
301.0
Intermediate monocyte nTPM: 298.3
Samples: 4
Max nTPM: 402.9
Min nTPM: 198.3
RHH5314_R3681
402.9
RHH5222_R3594
198.3
RHH5251_R3623
256.6
RHH5280_R3652
335.3
Non-classical monocyte nTPM: 180.1
Samples: 4
Max nTPM: 231.0
Min nTPM: 112.8
RHH5315_R3682
231.0
RHH5223_R3595
112.8
RHH5252_R3624
186.5
RHH5281_R3653
190.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
439.6
Schmiedel sample id
TPM
Classical monocyte TPM: 439.6
Samples: 91
Max TPM: 530.5
Min TPM: 314.8
MONOCYTES_1
530.5
MONOCYTES_2
528.9
MONOCYTES_3
524.5
MONOCYTES_4
522.6
MONOCYTES_5
513.0
MONOCYTES_6
506.6
MONOCYTES_7
505.4
MONOCYTES_8
503.4
MONOCYTES_9
491.8
MONOCYTES_10
489.6
MONOCYTES_11
488.3
MONOCYTES_12
487.6
MONOCYTES_13
485.3
MONOCYTES_14
484.9
MONOCYTES_15
484.6
MONOCYTES_16
483.3
MONOCYTES_17
481.8
MONOCYTES_18
477.7
MONOCYTES_19
477.6
MONOCYTES_20
477.3
MONOCYTES_21
476.3
MONOCYTES_22
476.2
MONOCYTES_23
476.0
MONOCYTES_24
474.8
MONOCYTES_25
474.2
MONOCYTES_26
473.3
MONOCYTES_27
470.4
MONOCYTES_28
470.3
MONOCYTES_29
470.1
MONOCYTES_30
470.1
MONOCYTES_31
469.8
MONOCYTES_32
466.6
MONOCYTES_33
465.3
MONOCYTES_34
464.5
MONOCYTES_35
460.7
MONOCYTES_36
460.6
MONOCYTES_37
460.3
MONOCYTES_38
457.2
MONOCYTES_39
456.5
MONOCYTES_40
453.9
MONOCYTES_41
453.7
MONOCYTES_42
451.3
MONOCYTES_43
449.5
MONOCYTES_44
449.2
MONOCYTES_45
447.7
MONOCYTES_46
446.0
MONOCYTES_47
445.7
MONOCYTES_48
443.3
MONOCYTES_49
441.6
MONOCYTES_50
441.6
MONOCYTES_51
441.3
MONOCYTES_52
441.0
MONOCYTES_53
438.9
MONOCYTES_54
437.9
MONOCYTES_55
435.4
MONOCYTES_56
433.8
MONOCYTES_57
433.7
MONOCYTES_58
431.9
MONOCYTES_59
431.2
MONOCYTES_60
428.8
MONOCYTES_61
426.5
MONOCYTES_62
419.2
MONOCYTES_63
413.6
MONOCYTES_64
412.1
MONOCYTES_65
409.6
MONOCYTES_66
407.5
MONOCYTES_67
406.2
MONOCYTES_68
404.7
MONOCYTES_69
403.6
MONOCYTES_70
401.8
MONOCYTES_71
401.5
MONOCYTES_72
399.8
MONOCYTES_73
397.8
MONOCYTES_74
395.9
MONOCYTES_75
394.9
MONOCYTES_76
390.4
MONOCYTES_77
389.4
MONOCYTES_78
378.3
MONOCYTES_79
377.6
MONOCYTES_80
376.2
MONOCYTES_81
373.4
MONOCYTES_82
372.4
MONOCYTES_83
370.0
MONOCYTES_84
367.9
MONOCYTES_85
360.0
MONOCYTES_86
359.3
MONOCYTES_87
357.5
MONOCYTES_88
340.4
MONOCYTES_89
339.4
MONOCYTES_90
327.2
MONOCYTES_91
314.8
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Non-classical monocyte TPM: 394.7
Samples: 90
Max TPM: 572.4
Min TPM: 209.6
M2_1
572.4
M2_2
503.5
M2_3
478.3
M2_4
477.1
M2_5
475.6
M2_6
470.6
M2_7
462.3
M2_8
460.7
M2_9
459.0
M2_10
453.9
M2_11
451.8
M2_12
450.6
M2_13
450.0
M2_14
448.4
M2_15
447.9
M2_16
446.4
M2_17
444.6
M2_18
444.5
M2_19
444.4
M2_20
438.6
M2_21
437.5
M2_22
437.2
M2_23
434.3
M2_24
433.2
M2_25
432.9
M2_26
428.6
M2_27
426.7
M2_28
422.9
M2_29
422.4
M2_30
420.7
M2_31
420.4
M2_32
418.4
M2_33
418.1
M2_34
417.4
M2_35
415.5
M2_36
415.5
M2_37
415.2
M2_38
414.2
M2_39
411.5
M2_40
411.1
M2_41
410.4
M2_42
410.2
M2_43
408.9
M2_44
406.3
M2_45
405.8
M2_46
405.6
M2_47
405.4
M2_48
402.7
M2_49
401.3
M2_50
399.4
M2_51
398.7
M2_52
398.5
M2_53
398.0
M2_54
397.2
M2_55
395.5
M2_56
388.7
M2_57
387.7
M2_58
387.4
M2_59
381.3
M2_60
379.7
M2_61
379.7
M2_62
376.8
M2_63
372.5
M2_64
370.9
M2_65
369.4
M2_66
368.1
M2_67
367.1
M2_68
363.7
M2_69
360.0
M2_70
358.9
M2_71
357.0
M2_72
354.2
M2_73
352.4
M2_74
340.1
M2_75
339.5
M2_76
336.3
M2_77
334.2
M2_78
329.8
M2_79
325.1
M2_80
323.7
M2_81
320.9
M2_82
312.9
M2_83
305.6
M2_84
302.0
M2_85
297.0
M2_86
273.3
M2_87
256.5
M2_88
253.2
M2_89
213.3
M2_90
209.6
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