MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.7 nTPM
HPA Brain:121.9 nTPM
GTEx:61.7 nTPM
FANTOM5:126.7 Scaled Tags Per Million
Pig:26.4 nTPM
Mouse:1.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 121.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 81.3
2019 Male, age 18, unknown 108.4
2586 Male, age 75, left hemisphere 101.9
1830 Male, age 51, unknown 97.5
2411 Female, age 72, unknown 96.0
1833 Male, age 53, unknown 88.3
1870 Female, age 42, unknown 86.2
2828 Female, age 72, unknown 79.7
2666 Male, age 74, left hemisphere 59.6
1827 Male, age 72, unknown 48.9
2219 Male, age 76, both hemispheres 46.2
Dorsal raphe nucleus
nTPM: 56.8
2750 Male, age 76, both hemispheres 119.7
2016 Female, age 72, unknown 56.1
1828 Male, age 53, unknown 52.0
2047 Male, age 72, unknown 31.4
2298 Female, age 72, unknown 24.9
Inferior colliculus
nTPM: 48.7
1890 Male, age 53, unknown 56.3
1848 Female, age 42, unknown 50.5
2849 Male, age 72, unknown 44.7
2097 Female, age 72, unknown 43.3
Median raphe nucleus
nTPM: 44.8
2220 Male, age 76, midline 44.8
Periaquaductal grey, anterior
nTPM: 42.5
1947 Male, age 18, unknown 44.6
1795 Male, age 51, unknown 42.3
2502 Female, age 75, unknown 40.7
Periaquaductal grey, dorsal
nTPM: 30.2
2464 Female, age 72, unknown 55.7
1831 Male, age 72, unknown 33.4
1840 Male, age 53, unknown 17.4
2850 Male, age 76, both hemispheres 14.2
Periaquaductal grey, lateral
nTPM: 34.3
2272 Male, age 74, both hemispheres 49.7
2053 Male, age 18, unknown 35.4
2140 Male, age 76, both hemispheres 17.8
Pretectal area
nTPM: 47.5
2316 Male, age 76, right hemisphere 73.5
2407 Male, age 75, both hemispheres 64.6
1815 Male, age 53, unknown 64.2
2007 Male, age 72, unknown 60.4
1817 Female, age 42, unknown 56.9
2825 Male, age 18, unknown 44.0
2273 Male, age 74, both hemispheres 42.0
2224 Female, age 72, unknown 35.6
1944 Female, age 72, unknown 28.9
1816 Male, age 51, unknown 28.7
2667 Female, age 75, unknown 24.2
Red nucleus
nTPM: 121.9
2769 Male, age 72, unknown 152.4
2785 Male, age 18, unknown 147.8
2227 Male, age 72, unknown 147.6
1904 Male, age 53, unknown 141.7
2503 Female, age 72, unknown 139.3
1865 Male, age 51, unknown 124.1
2588 Male, age 74, left hemisphere 115.5
1821 Female, age 72, unknown 109.4
1954 Female, age 42, unknown 103.5
2823 Male, age 76, right hemisphere 98.6
2725 Female, age 75, unknown 97.5
2584 Male, age 75, left hemisphere 85.7
Substantia nigra
nTPM: 52.5
2590 Female, age 75, unknown 81.1
2583 Male, age 75, right hemisphere 77.1
1889 Female, age 72, unknown 60.8
1851 Male, age 51, unknown 58.2
2409 Female, age 72, unknown 51.0
1941 Male, age 53, unknown 43.3
2699 Male, age 18, unknown 41.9
1916 Female, age 42, unknown 41.4
2665 Male, age 74, both hemispheres 37.7
2241 Male, age 72, unknown 32.7
Superior colliculus
nTPM: 65.8
1913 Female, age 42, unknown 102.6
1995 Male, age 72, unknown 94.1
2668 Female, age 75, unknown 90.2
1839 Male, age 51, unknown 67.0
1895 Male, age 76, right hemisphere 66.7
2587 Male, age 74, left hemisphere 63.2
2664 Male, age 75, both hemispheres 54.1
1796 Male, age 53, unknown 51.2
2261 Male, age 18, unknown 37.4
2087 Female, age 72, unknown 32.1
Ventral tegmental area
nTPM: 64.0
2223 Female, age 72, unknown 98.9
2410 Female, age 72, unknown 69.4
1942 Male, age 51, unknown 59.8
2021 Male, age 53, unknown 54.5
1915 Female, age 42, unknown 51.6
2218 Male, age 76, both hemispheres 49.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 61.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.7
Samples: 183

Max nTPM: 422.5
Min nTPM: 2.0
Std nTPM: 53.3
Median nTPM: 49.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 422.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 325.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 285.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 234.8
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 205.0
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 176.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 173.2
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 171.0
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 165.0
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 164.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 160.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 126.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.7
FF:10158-103A5 76 years, female 126.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.8
Samples: 4

Max nTPM: 31.0
Min nTPM: 14.6
Sample A Female 29.0
Sample B Female 14.6
Sample C Male 16.6
Sample D Male 31.0
Midbrain
nTPM: 26.4
Samples: 4

Max nTPM: 52.1
Min nTPM: 13.2
Sample A Female 52.1
Sample B Female 26.2
Sample C Male 13.2
Sample D Male 14.0
Periaqueductal gray
nTPM: 17.6
Samples: 3

Max nTPM: 23.3
Min nTPM: 13.8
Sample B Female 23.3
Sample C Male 13.8
Sample D Male 15.8
Superior colliculi
nTPM: 18.3
Samples: 4

Max nTPM: 26.5
Min nTPM: 8.8
Sample A Female 26.5
Sample B Female 8.8
Sample C Male 17.1
Sample D Male 20.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.3
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.9
Sample A Male 1.6
Sample B Male 0.9
Sample C Female 0.9
Sample D Female 1.6

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