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NKX6-2
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  • NKX6-2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:104.4 nTPM
HPA Brain:73.2 nTPM
GTEx:104.4 nTPM
FANTOM5:49.6 Scaled Tags Per Million
Pig:26.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 59.1
2194 Female, age 79, both hemispheres 74.2
1981 Female, age 72, midline 70.9
2816 Male, age 47, midline 61.5
2565 Male, age 75, midline 46.7
2048 Male, age 55, midline 42.1
Cervical spinal cord, dorsal horn
nTPM: 67.2
2296 Male, age 66, both hemispheres 110.9
2173 Female, age 72, unknown 96.7
2069 Male, age 47, both hemispheres 62.4
1877 Male, age 55, unknown 60.0
2297 Male, age 75, both hemispheres 40.3
2721 Male, age 90, both hemispheres 32.7
Cervical spinal cord, ventral horn
nTPM: 73.2
2068 Male, age 55, unknown 104.0
2820 Female, age 79, both hemispheres 78.9
2480 Male, age 75, both hemispheres 76.5
2809 Male, age 90, both hemispheres 75.2
2295 Male, age 66, both hemispheres 61.6
2098 Female, age 72, unknown 43.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 104.4
Samples: 204

Max nTPM: 283.9
Min nTPM: 26.1
Std nTPM: 41.9
Median nTPM: 98.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 283.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 251.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 244.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 221.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 219.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 197.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 197.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 189.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 185.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 185.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 185.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 184.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 184.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 181.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 179.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 176.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 169.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 167.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 164.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 159.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 154.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 154.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 152.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 150.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 149.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 148.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 146.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 143.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 142.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 142.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 142.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 142.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 140.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 139.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 138.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 136.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 135.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 135.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 134.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 133.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 132.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 131.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 131.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 131.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 129.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 129.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 129.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 128.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 127.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 126.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 126.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 125.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 124.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 123.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 123.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 122.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 121.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 121.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 121.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 120.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 119.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 119.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 118.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 117.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 116.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 116.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 115.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 115.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 114.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 114.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 112.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 111.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 110.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 110.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 110.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 110.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 110.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 109.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 108.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 108.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 108.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 107.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 106.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 106.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 105.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 105.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 104.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 104.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 104.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 103.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 103.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 102.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 102.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 101.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 101.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 100.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 100.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 99.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 99.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 99.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 99.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 98.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 98.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 98.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 97.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 96.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 94.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 94.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 94.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 93.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 93.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 92.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 92.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 91.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 90.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 90.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 90.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 89.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 88.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 88.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 88.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 88.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 87.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 87.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 86.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 85.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 85.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 84.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 84.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 83.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 83.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 83.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 82.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 81.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 81.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 81.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 80.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 79.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 79.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 79.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 79.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 79.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 78.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 77.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 77.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 77.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 77.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 77.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 77.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 76.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 76.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 76.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 76.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 75.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 75.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 75.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 74.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 74.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 74.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 73.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 72.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 72.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 72.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 72.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 71.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 70.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 69.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 68.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 68.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 67.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 67.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 67.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 66.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 64.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 64.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 64.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 63.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 63.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 63.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 62.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 62.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 60.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 59.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 59.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 58.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 57.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 57.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 57.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 56.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 55.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 54.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 54.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 54.2
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 51.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 49.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 45.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 45.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 44.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 42.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 42.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 41.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 36.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 30.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 26.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

49.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 49.6
FF:10181-103D1 60 years, female 63.0
FF:10159-103A6 76 years, female 36.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 22.7
Samples: 4

Max nTPM: 28.5
Min nTPM: 15.3
Sample A Female 28.5
Sample B Female 21.3
Sample C Male 15.3
Sample D Male 25.8
Ventral spinal cord
nTPM: 26.5
Samples: 4

Max nTPM: 29.1
Min nTPM: 23.0
Sample A Female 24.8
Sample B Female 29.1
Sample C Male 23.0
Sample D Male 29.0

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