A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1607.5
nTPM
Monaco:
1156.3
nTPM
Schmiedel:
632.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1607.5
HPA sample
nTPM
Memory B-cell nTPM: 1607.5
Samples: 6
Max nTPM: 2163.3
Min nTPM: 1081.4
P10809_1017
1081.4
P10809_1025
2163.3
P10809_1044
1223.7
P10809_1063
1560.1
P10809_1092
1940.5
P10809_1105
1676.1
Naive B-cell nTPM: 1458.6
Samples: 6
Max nTPM: 1985.9
Min nTPM: 1038.7
P10809_1011
1038.7
P10809_1029
1985.9
P10809_1048
1591.0
P10809_1067
1175.7
P10809_1091
1407.9
P10809_1104
1552.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1156.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 1039.7
Samples: 4
Max nTPM: 1680.9
Min nTPM: 497.5
RHH5310_R3677
1253.1
RHH5218_R3590
497.5
RHH5247_R3619
1680.9
RHH5276_R3648
727.3
Naive B-cell nTPM: 1008.2
Samples: 4
Max nTPM: 1462.6
Min nTPM: 771.2
RHH5308_R3675
1462.6
RHH5216_R3588
771.2
RHH5245_R3617
1016.6
RHH5274_R3646
782.4
Non-switched memory B-cell nTPM: 1117.0
Samples: 4
Max nTPM: 1469.3
Min nTPM: 895.2
RHH5309_R3676
1469.3
RHH5217_R3589
999.0
RHH5246_R3618
1104.6
RHH5275_R3647
895.2
Plasmablast nTPM: 784.1
Samples: 4
Max nTPM: 923.6
Min nTPM: 615.0
RHH5312_R3679
923.6
RHH5220_R3592
615.0
RHH5249_R3621
841.5
RHH5278_R3650
756.2
Switched memory B-cell nTPM: 1156.2
Samples: 4
Max nTPM: 1844.9
Min nTPM: 807.9
RHH5311_R3678
1844.9
RHH5219_R3591
1157.2
RHH5248_R3620
814.9
RHH5277_R3649
807.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
632.2
Schmiedel sample id
TPM
Naive B-cell TPM: 632.2
Samples: 91
Max TPM: 870.1
Min TPM: 336.7
B_CELL_NAIVE_1
870.1
B_CELL_NAIVE_2
848.5
B_CELL_NAIVE_3
816.9
B_CELL_NAIVE_4
786.6
B_CELL_NAIVE_5
769.5
B_CELL_NAIVE_6
766.4
B_CELL_NAIVE_7
761.6
B_CELL_NAIVE_8
758.4
B_CELL_NAIVE_9
756.1
B_CELL_NAIVE_10
754.0
B_CELL_NAIVE_11
750.6
B_CELL_NAIVE_12
750.6
B_CELL_NAIVE_13
747.8
B_CELL_NAIVE_14
744.9
B_CELL_NAIVE_15
738.6
B_CELL_NAIVE_16
738.6
B_CELL_NAIVE_17
733.5
B_CELL_NAIVE_18
723.2
B_CELL_NAIVE_19
723.0
B_CELL_NAIVE_20
718.8
B_CELL_NAIVE_21
703.9
B_CELL_NAIVE_22
699.2
B_CELL_NAIVE_23
698.1
B_CELL_NAIVE_24
689.8
B_CELL_NAIVE_25
689.7
B_CELL_NAIVE_26
689.6
B_CELL_NAIVE_27
689.1
B_CELL_NAIVE_28
686.2
B_CELL_NAIVE_29
680.9
B_CELL_NAIVE_30
678.6
B_CELL_NAIVE_31
677.5
B_CELL_NAIVE_32
677.4
B_CELL_NAIVE_33
677.2
B_CELL_NAIVE_34
676.2
B_CELL_NAIVE_35
675.7
B_CELL_NAIVE_36
675.3
B_CELL_NAIVE_37
671.4
B_CELL_NAIVE_38
665.4
B_CELL_NAIVE_39
665.4
B_CELL_NAIVE_40
662.7
B_CELL_NAIVE_41
660.7
B_CELL_NAIVE_42
660.2
B_CELL_NAIVE_43
658.8
B_CELL_NAIVE_44
655.1
B_CELL_NAIVE_45
654.8
B_CELL_NAIVE_46
651.1
B_CELL_NAIVE_47
646.9
B_CELL_NAIVE_48
646.1
B_CELL_NAIVE_49
645.4
B_CELL_NAIVE_50
638.9
B_CELL_NAIVE_51
636.6
B_CELL_NAIVE_52
631.9
B_CELL_NAIVE_53
627.3
B_CELL_NAIVE_54
624.4
B_CELL_NAIVE_55
622.0
B_CELL_NAIVE_56
620.0
B_CELL_NAIVE_57
617.3
B_CELL_NAIVE_58
616.0
B_CELL_NAIVE_59
611.7
B_CELL_NAIVE_60
611.2
B_CELL_NAIVE_61
604.2
B_CELL_NAIVE_62
602.7
B_CELL_NAIVE_63
602.1
B_CELL_NAIVE_64
589.1
B_CELL_NAIVE_65
585.6
B_CELL_NAIVE_66
584.8
B_CELL_NAIVE_67
580.1
B_CELL_NAIVE_68
575.0
B_CELL_NAIVE_69
572.8
B_CELL_NAIVE_70
571.7
B_CELL_NAIVE_71
571.3
B_CELL_NAIVE_72
570.4
B_CELL_NAIVE_73
567.3
B_CELL_NAIVE_74
558.7
B_CELL_NAIVE_75
543.6
B_CELL_NAIVE_76
542.3
B_CELL_NAIVE_77
532.2
B_CELL_NAIVE_78
530.2
B_CELL_NAIVE_79
525.4
B_CELL_NAIVE_80
522.1
B_CELL_NAIVE_81
512.8
B_CELL_NAIVE_82
508.1
B_CELL_NAIVE_83
499.9
B_CELL_NAIVE_84
468.8
B_CELL_NAIVE_85
435.7
B_CELL_NAIVE_86
420.9
B_CELL_NAIVE_87
361.8
B_CELL_NAIVE_88
348.6
B_CELL_NAIVE_89
347.2
B_CELL_NAIVE_90
337.8
B_CELL_NAIVE_91
336.7
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