A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1144.4
nTPM
Monaco:
503.5
nTPM
Schmiedel:
586.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1144.4
HPA sample
nTPM
NK-cell nTPM: 1144.5
Samples: 6
Max nTPM: 2002.4
Min nTPM: 439.8
P10809_1013
439.8
P10809_1033
2002.4
P10809_1052
1307.8
P10809_1071
1147.7
P10809_1093
547.3
P10809_1103
1421.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
503.5
Monaco sample
nTPM
NK-cell nTPM: 503.6
Samples: 4
Max nTPM: 637.2
Min nTPM: 377.1
RHH5316_R3683
637.2
RHH5224_R3596
456.6
RHH5253_R3625
377.1
RHH5282_R3654
543.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
586.5
Schmiedel sample id
TPM
NK-cell TPM: 586.5
Samples: 90
Max TPM: 893.0
Min TPM: 398.0
NK_1
893.0
NK_2
808.2
NK_3
796.6
NK_4
773.0
NK_5
771.0
NK_6
769.1
NK_7
767.3
NK_8
755.2
NK_9
743.3
NK_10
736.2
NK_11
718.7
NK_12
710.1
NK_13
698.8
NK_14
697.2
NK_15
692.1
NK_16
692.1
NK_17
669.9
NK_18
667.6
NK_19
663.5
NK_20
660.2
NK_21
656.9
NK_22
655.5
NK_23
655.1
NK_24
653.6
NK_25
653.3
NK_26
647.4
NK_27
644.9
NK_28
636.6
NK_29
636.2
NK_30
633.8
NK_31
631.5
NK_32
631.4
NK_33
624.9
NK_34
620.7
NK_35
613.0
NK_36
605.7
NK_37
603.6
NK_38
596.9
NK_39
595.8
NK_40
595.4
NK_41
592.1
NK_42
587.1
NK_43
584.1
NK_44
579.7
NK_45
578.5
NK_46
570.7
NK_47
570.1
NK_48
567.5
NK_49
563.1
NK_50
562.6
NK_51
559.8
NK_52
558.2
NK_53
556.9
NK_54
556.4
NK_55
555.9
NK_56
553.8
NK_57
547.1
NK_58
541.8
NK_59
539.5
NK_60
538.3
NK_61
537.9
NK_62
535.4
NK_63
534.3
NK_64
516.9
NK_65
513.8
NK_66
511.9
NK_67
511.7
NK_68
508.1
NK_69
507.7
NK_70
507.0
NK_71
503.8
NK_72
500.6
NK_73
499.0
NK_74
497.6
NK_75
488.1
NK_76
477.7
NK_77
476.6
NK_78
464.8
NK_79
453.6
NK_80
451.1
NK_81
448.0
NK_82
446.6
NK_83
442.6
NK_84
440.5
NK_85
431.4
NK_86
420.5
NK_87
419.2
NK_88
402.2
NK_89
398.3
NK_90
398.0
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