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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:326.7 nTPM
GTEx:326.7 nTPM
FANTOM5:305.3 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

326.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 326.7
Samples: 105

Max nTPM: 471.4
Min nTPM: 153.1
Std nTPM: 62.7
Median nTPM:
35_1 74 years, female 471.4
389_1 86 years, female 455.8
237_1 82 years, male 454.0
386_1 76 years, male 446.3
384_1 83 years, male 444.2
41_1 94 years, female 431.3
321_1 62 years, female 425.6
153_1 70 years, female 425.3
375_1 74 years, female 419.7
246_1 77 years, male 414.2
379_1 60 years, male 412.0
526_1 61 years, male 411.0
396_1 62 years, male 406.2
189_1 76 years, male 403.4
120_1 70 years, female 399.8
355_1 70 years, female 399.2
6_1 73 years, female 397.8
145_1 84 years, male 393.2
447_1 81 years, male 390.8
307_1 66 years, female 385.6
320_1 89 years, female 385.4
17_1 71 years, male 381.7
229_1 69 years, female 380.5
42_1 85 years, male 371.6
2_1 77 years, female 370.2
137_1 83 years, male 361.3
18_1 88 years, male 360.4
335_1 73 years, female 357.8
251_1 78 years, male 356.5
217_1 76 years, male 356.4
376_1 75 years, female 353.4
126_1 63 years, male 353.3
4_1 88 years, female 352.2
311_1 78 years, male 345.0
377_1 82 years, female 344.3
347_1 72 years, male 342.7
405_1 91 years, male 342.6
243_1 75 years, male 340.1
351_1 91 years, male 338.2
316_1 62 years, male 336.7
317_1 60 years, male 335.7
322_1 76 years, male 335.0
81_1 67 years, male 334.4
319_1 81 years, male 332.7
173_1 67 years, male 331.7
480_1 63 years, male 330.8
350_1 84 years, female 330.0
218_1 71 years, female 328.7
348_1 84 years, male 328.6
99_1 64 years, male 327.4
288_1 66 years, female 326.5
354_1 81 years, female 325.6
117_1 61 years, male 325.3
468_1 89 years, male 325.3
452_1 88 years, female 324.2
265_1 87 years, male 321.7
115_1 83 years, male 319.0
139_1 64 years, female 318.4
394_1 75 years, female 318.2
404_1 82 years, female 318.1
295_1 61 years, female 317.0
315_1 62 years, female 316.6
264_1 73 years, female 315.4
314_1 67 years, male 314.9
518_1 75 years, female 309.4
177_1 74 years, male 308.7
353_1 82 years, female 305.2
324_1 76 years, male 302.4
503_1 68 years, male 301.4
142_1 61 years, female 299.6
349_1 83 years, male 299.1
254_1 77 years, female 298.9
32_1 67 years, male 296.2
9_1 66 years, female 296.0
318_1 68 years, male 296.0
506_1 65 years, male 295.9
291_1 76 years, male 295.5
109_1 81 years, female 294.7
266_1 85 years, male 292.5
499_1 55 years, female 290.6
313_1 79 years, female 290.3
352_1 62 years, male 289.9
162_1 79 years, female 287.8
292_1 71 years, male 285.5
172_1 72 years, female 284.8
308_1 70 years, female 284.7
286_1 68 years, female 276.5
119_1 70 years, female 272.8
495_1 57 years, female 271.0
425_1 59 years, female 270.8
406_1 79 years, male 265.1
356_1 87 years, female 264.8
163_1 78 years, male 263.4
415_1 77 years, female 260.9
293_1 68 years, female 260.3
517_1 88 years, male 258.4
466_1 57 years, female 246.6
43_1 64 years, female 235.0
414_1 84 years, female 218.7
89_1 63 years, male 211.4
501_1 88 years, male 206.3
149_1 88 years, male 205.5
491_1 89 years, female 189.5
490_1 67 years, female 153.4
413_1 59 years, female 153.1
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

305.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 305.3
FF:10030-101E3 24-65 years, mixed 305.3

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