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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1315.9 nTPM
GTEx:1315.9 nTPM
FANTOM5:851.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA063339
Squamous epithelial cells Low

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1315.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1315.9
Samples: 170

Max nTPM: 3038.5
Min nTPM: 661.7
Std nTPM: 352.9
Median nTPM: 1257.6
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 3038.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 2525.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2440.4
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 2202.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2118.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2115.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2045.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1979.6
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 1898.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1883.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1819.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1818.3
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1789.9
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 1749.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1748.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1748.7
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1744.6
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 1731.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1724.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1722.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1709.9
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1703.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1697.3
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1695.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1682.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1644.5
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 1638.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1628.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1624.4
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1624.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1620.1
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 1613.4
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1603.9
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 1588.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1552.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1545.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1544.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1531.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1529.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1519.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1507.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1505.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1505.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1491.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1488.9
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1482.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1467.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1461.7
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 1446.4
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1439.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1435.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1428.0
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 1423.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1412.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1410.5
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1402.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1397.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1390.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1389.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1388.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1386.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1372.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1369.4
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1367.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1361.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1361.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1354.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1343.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1340.1
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 1337.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 1325.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1325.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1312.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1302.7
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1297.7
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1290.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1289.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1288.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1288.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1281.7
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1278.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1275.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1271.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1270.5
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 1259.5
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1255.6
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1253.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1253.4
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1239.1
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1238.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1236.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1228.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1227.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1227.2
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1225.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1219.5
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1218.0
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1217.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1216.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1215.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1209.0
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1199.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1197.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1195.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1194.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1188.0
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1186.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1181.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1180.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1173.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1171.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1154.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1151.5
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1147.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1143.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1143.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1136.9
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1127.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1125.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1122.3
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1121.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1115.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1104.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1094.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1093.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 1089.3
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 1088.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1086.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1071.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1070.0
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 1067.7
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1051.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1038.6
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1038.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1036.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1034.2
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1032.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1018.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1017.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1016.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1000.3
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 997.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 997.7
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 989.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 986.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 967.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 960.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 958.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 951.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 945.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 938.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 919.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 915.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 892.4
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 884.3
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 873.6
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 870.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 865.8
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 860.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 858.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 848.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 838.3
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 836.9
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 836.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 834.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 834.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 831.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 774.0
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 718.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 661.7
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

851.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 851.9
FF:10204-103F6 68 years, female 851.9

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