We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPS3
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPS3
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:580.3 nTPM
HPA Brain:198.6 nTPM
GTEx:580.3 nTPM
FANTOM5:235.3 Scaled Tags Per Million
Pig:742.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

198.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 159.3
2565 Male, age 75, midline 181.7
1981 Female, age 72, midline 174.1
2048 Male, age 55, midline 154.8
2194 Female, age 79, both hemispheres 143.2
2816 Male, age 47, midline 142.6
Cervical spinal cord, dorsal horn
nTPM: 169.7
2173 Female, age 72, unknown 193.2
1877 Male, age 55, unknown 188.3
2296 Male, age 66, both hemispheres 181.4
2069 Male, age 47, both hemispheres 180.0
2721 Male, age 90, both hemispheres 141.1
2297 Male, age 75, both hemispheres 133.9
Cervical spinal cord, ventral horn
nTPM: 198.6
2480 Male, age 75, both hemispheres 242.0
2809 Male, age 90, both hemispheres 230.0
2098 Female, age 72, unknown 225.7
2295 Male, age 66, both hemispheres 191.2
2068 Male, age 55, unknown 175.4
2820 Female, age 79, both hemispheres 127.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

580.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 580.3
Samples: 204

Max nTPM: 1197.4
Min nTPM: 257.8
Std nTPM: 147.8
Median nTPM: 579.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 1197.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 970.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 932.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 918.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 912.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 910.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 901.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 862.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 852.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 846.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 845.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 835.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 827.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 802.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 802.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 801.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 797.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 794.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 790.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 777.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 773.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 772.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 765.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 759.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 758.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 749.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 747.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 744.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 738.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 737.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 735.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 735.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 732.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 731.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 727.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 716.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 714.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 707.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 706.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 698.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 694.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 694.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 686.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 684.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 680.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 673.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 672.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 672.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 669.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 666.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 665.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 665.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 655.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 651.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 649.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 648.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 647.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 646.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 645.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 643.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 643.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 638.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 638.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 637.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 635.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 630.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 625.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 625.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 625.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 623.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 622.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 622.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 621.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 619.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 619.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 616.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 612.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 612.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 612.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 611.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 611.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 607.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 607.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 606.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 606.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 606.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 604.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 602.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 601.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 593.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 593.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 592.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 588.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 588.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 586.6
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 585.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 583.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 582.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 580.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 580.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 579.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 579.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 579.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 578.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 577.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 573.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 571.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 570.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 565.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 563.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 561.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 561.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 554.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 553.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 545.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 544.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 543.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 543.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 536.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 536.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 536.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 535.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 534.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 529.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 525.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 525.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 523.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 518.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 518.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 518.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 516.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 510.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 508.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 507.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 503.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 503.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 502.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 502.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 501.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 500.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 499.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 497.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 497.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 496.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 496.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 495.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 493.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 490.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 486.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 480.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 480.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 480.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 479.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 477.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 473.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 472.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 471.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 467.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 466.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 465.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 461.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 457.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 450.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 445.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 444.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 437.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 434.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 433.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 430.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 430.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 429.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 427.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 426.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 425.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 425.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 425.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 419.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 418.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 416.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 414.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 408.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 408.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 407.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 403.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 400.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 389.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 388.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 383.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 381.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 381.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 371.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 370.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 364.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 362.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 355.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 353.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 353.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 349.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 347.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 339.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 325.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 303.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 266.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 257.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

235.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 235.3
FF:10181-103D1 60 years, female 269.8
FF:10159-103A6 76 years, female 200.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

742.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 742.1
Samples: 4

Max nTPM: 1052.1
Min nTPM: 556.0
Sample A Female 556.0
Sample B Female 797.0
Sample C Male 1052.1
Sample D Male 563.2
Ventral spinal cord
nTPM: 671.1
Samples: 4

Max nTPM: 774.0
Min nTPM: 525.2
Sample A Female 525.2
Sample B Female 753.9
Sample C Male 774.0
Sample D Male 631.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo