A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.8
nTPM
Monaco:
13.2
nTPM
Schmiedel:
76.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.8
HPA sample
nTPM
Memory B-cell nTPM: 28.8
Samples: 6
Max nTPM: 37.9
Min nTPM: 18.4
P10809_1017
23.5
P10809_1025
37.9
P10809_1044
18.4
P10809_1063
31.9
P10809_1092
27.1
P10809_1105
34.1
Naive B-cell nTPM: 25.3
Samples: 6
Max nTPM: 37.0
Min nTPM: 14.7
P10809_1011
14.7
P10809_1029
30.5
P10809_1048
23.2
P10809_1067
24.7
P10809_1091
21.8
P10809_1104
37.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 9.8
Samples: 4
Max nTPM: 18.4
Min nTPM: 2.6
RHH5310_R3677
18.4
RHH5218_R3590
2.6
RHH5247_R3619
12.3
RHH5276_R3648
6.0
Naive B-cell nTPM: 8.8
Samples: 4
Max nTPM: 11.0
Min nTPM: 6.1
RHH5308_R3675
8.7
RHH5216_R3588
11.0
RHH5245_R3617
6.1
RHH5274_R3646
9.4
Non-switched memory B-cell nTPM: 9.3
Samples: 4
Max nTPM: 15.8
Min nTPM: 4.6
RHH5309_R3676
4.6
RHH5217_R3589
9.9
RHH5246_R3618
6.9
RHH5275_R3647
15.8
Plasmablast nTPM: 13.3
Samples: 4
Max nTPM: 17.8
Min nTPM: 8.0
RHH5312_R3679
15.9
RHH5220_R3592
8.0
RHH5249_R3621
17.8
RHH5278_R3650
11.4
Switched memory B-cell nTPM: 11.1
Samples: 4
Max nTPM: 18.7
Min nTPM: 6.1
RHH5311_R3678
18.7
RHH5219_R3591
11.3
RHH5248_R3620
8.2
RHH5277_R3649
6.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.6
Schmiedel sample id
TPM
Naive B-cell TPM: 76.6
Samples: 91
Max TPM: 109.7
Min TPM: 51.7
B_CELL_NAIVE_1
109.7
B_CELL_NAIVE_2
107.4
B_CELL_NAIVE_3
106.3
B_CELL_NAIVE_4
102.9
B_CELL_NAIVE_5
97.8
B_CELL_NAIVE_6
95.3
B_CELL_NAIVE_7
94.9
B_CELL_NAIVE_8
93.5
B_CELL_NAIVE_9
92.8
B_CELL_NAIVE_10
91.9
B_CELL_NAIVE_11
91.5
B_CELL_NAIVE_12
90.3
B_CELL_NAIVE_13
89.8
B_CELL_NAIVE_14
89.8
B_CELL_NAIVE_15
89.2
B_CELL_NAIVE_16
89.2
B_CELL_NAIVE_17
88.8
B_CELL_NAIVE_18
87.9
B_CELL_NAIVE_19
87.7
B_CELL_NAIVE_20
87.0
B_CELL_NAIVE_21
86.6
B_CELL_NAIVE_22
86.4
B_CELL_NAIVE_23
86.2
B_CELL_NAIVE_24
85.9
B_CELL_NAIVE_25
85.2
B_CELL_NAIVE_26
84.3
B_CELL_NAIVE_27
83.4
B_CELL_NAIVE_28
83.4
B_CELL_NAIVE_29
82.3
B_CELL_NAIVE_30
82.1
B_CELL_NAIVE_31
81.0
B_CELL_NAIVE_32
80.4
B_CELL_NAIVE_33
80.2
B_CELL_NAIVE_34
79.6
B_CELL_NAIVE_35
79.6
B_CELL_NAIVE_36
79.5
B_CELL_NAIVE_37
79.3
B_CELL_NAIVE_38
78.7
B_CELL_NAIVE_39
78.5
B_CELL_NAIVE_40
78.0
B_CELL_NAIVE_41
78.0
B_CELL_NAIVE_42
77.2
B_CELL_NAIVE_43
77.1
B_CELL_NAIVE_44
76.8
B_CELL_NAIVE_45
76.1
B_CELL_NAIVE_46
76.1
B_CELL_NAIVE_47
75.2
B_CELL_NAIVE_48
75.0
B_CELL_NAIVE_49
74.6
B_CELL_NAIVE_50
74.2
B_CELL_NAIVE_51
73.8
B_CELL_NAIVE_52
73.7
B_CELL_NAIVE_53
73.6
B_CELL_NAIVE_54
73.3
B_CELL_NAIVE_55
72.1
B_CELL_NAIVE_56
72.0
B_CELL_NAIVE_57
71.8
B_CELL_NAIVE_58
71.8
B_CELL_NAIVE_59
71.0
B_CELL_NAIVE_60
71.0
B_CELL_NAIVE_61
70.2
B_CELL_NAIVE_62
69.6
B_CELL_NAIVE_63
69.4
B_CELL_NAIVE_64
68.7
B_CELL_NAIVE_65
68.7
B_CELL_NAIVE_66
68.6
B_CELL_NAIVE_67
68.5
B_CELL_NAIVE_68
68.4
B_CELL_NAIVE_69
67.1
B_CELL_NAIVE_70
66.8
B_CELL_NAIVE_71
66.5
B_CELL_NAIVE_72
66.2
B_CELL_NAIVE_73
65.9
B_CELL_NAIVE_74
64.9
B_CELL_NAIVE_75
64.4
B_CELL_NAIVE_76
64.2
B_CELL_NAIVE_77
64.2
B_CELL_NAIVE_78
63.8
B_CELL_NAIVE_79
63.8
B_CELL_NAIVE_80
63.3
B_CELL_NAIVE_81
61.7
B_CELL_NAIVE_82
59.3
B_CELL_NAIVE_83
58.7
B_CELL_NAIVE_84
58.7
B_CELL_NAIVE_85
58.4
B_CELL_NAIVE_86
57.3
B_CELL_NAIVE_87
56.7
B_CELL_NAIVE_88
55.3
B_CELL_NAIVE_89
54.0
B_CELL_NAIVE_90
52.5
B_CELL_NAIVE_91
51.7
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The Human Protein Atlas project is funded
