A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
36.1
nTPM
Monaco:
13.7
nTPM
Schmiedel:
60.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.1
HPA sample
nTPM
Classical monocyte nTPM: 22.6
Samples: 6
Max nTPM: 28.1
Min nTPM: 16.3
P10809_1003
16.3
P10809_1020
26.8
P10809_1039
28.1
P10809_1058
19.0
P10809_1080
17.4
P10809_1107
28.1
Intermediate monocyte nTPM: 28.0
Samples: 6
Max nTPM: 45.7
Min nTPM: 18.4
P10809_1004
25.4
P10809_1023
29.8
P10809_1042
18.4
P10809_1061
27.6
P10809_1081
21.2
P10809_1108
45.7
Non-classical monocyte nTPM: 36.1
Samples: 5
Max nTPM: 47.7
Min nTPM: 25.8
P10809_1005
25.8
P10809_1053
31.1
P10809_1072
47.7
P10809_1082
28.3
P10809_1109
47.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.7
Monaco sample
nTPM
Classical monocyte nTPM: 12.4
Samples: 4
Max nTPM: 15.1
Min nTPM: 10.8
RHH5313_R3680
15.1
RHH5221_R3593
11.5
RHH5250_R3622
12.2
RHH5279_R3651
10.8
Intermediate monocyte nTPM: 11.0
Samples: 4
Max nTPM: 13.1
Min nTPM: 8.4
RHH5314_R3681
13.1
RHH5222_R3594
8.4
RHH5251_R3623
13.0
RHH5280_R3652
9.6
Non-classical monocyte nTPM: 13.7
Samples: 4
Max nTPM: 15.4
Min nTPM: 9.4
RHH5315_R3682
15.4
RHH5223_R3595
14.8
RHH5252_R3624
9.4
RHH5281_R3653
15.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.5
Schmiedel sample id
TPM
Classical monocyte TPM: 45.1
Samples: 91
Max TPM: 57.2
Min TPM: 31.2
MONOCYTES_1
57.2
MONOCYTES_2
55.6
MONOCYTES_3
52.3
MONOCYTES_4
52.3
MONOCYTES_5
51.9
MONOCYTES_6
51.5
MONOCYTES_7
51.3
MONOCYTES_8
51.2
MONOCYTES_9
50.9
MONOCYTES_10
50.8
MONOCYTES_11
50.7
MONOCYTES_12
50.5
MONOCYTES_13
50.4
MONOCYTES_14
50.1
MONOCYTES_15
49.9
MONOCYTES_16
49.9
MONOCYTES_17
49.6
MONOCYTES_18
49.6
MONOCYTES_19
49.1
MONOCYTES_20
49.0
MONOCYTES_21
48.5
MONOCYTES_22
48.4
MONOCYTES_23
48.1
MONOCYTES_24
48.0
MONOCYTES_25
47.7
MONOCYTES_26
47.6
MONOCYTES_27
47.6
MONOCYTES_28
47.5
MONOCYTES_29
47.4
MONOCYTES_30
47.3
MONOCYTES_31
47.0
MONOCYTES_32
46.9
MONOCYTES_33
46.8
MONOCYTES_34
46.8
MONOCYTES_35
46.8
MONOCYTES_36
46.7
MONOCYTES_37
46.7
MONOCYTES_38
46.6
MONOCYTES_39
46.5
MONOCYTES_40
46.5
MONOCYTES_41
46.4
MONOCYTES_42
46.4
MONOCYTES_43
46.3
MONOCYTES_44
46.1
MONOCYTES_45
45.7
MONOCYTES_46
45.6
MONOCYTES_47
45.6
MONOCYTES_48
45.6
MONOCYTES_49
45.1
MONOCYTES_50
45.0
MONOCYTES_51
45.0
MONOCYTES_52
44.9
MONOCYTES_53
44.8
MONOCYTES_54
44.5
MONOCYTES_55
44.2
MONOCYTES_56
44.1
MONOCYTES_57
43.6
MONOCYTES_58
42.8
MONOCYTES_59
42.7
MONOCYTES_60
42.6
MONOCYTES_61
42.5
MONOCYTES_62
42.1
MONOCYTES_63
42.0
MONOCYTES_64
41.9
MONOCYTES_65
41.8
MONOCYTES_66
41.8
MONOCYTES_67
41.6
MONOCYTES_68
41.6
MONOCYTES_69
41.5
MONOCYTES_70
41.4
MONOCYTES_71
41.4
MONOCYTES_72
41.3
MONOCYTES_73
41.1
MONOCYTES_74
40.8
MONOCYTES_75
40.6
MONOCYTES_76
40.5
MONOCYTES_77
40.5
MONOCYTES_78
40.4
MONOCYTES_79
40.1
MONOCYTES_80
39.7
MONOCYTES_81
39.7
MONOCYTES_82
39.3
MONOCYTES_83
39.2
MONOCYTES_84
38.4
MONOCYTES_85
38.3
MONOCYTES_86
38.2
MONOCYTES_87
37.6
MONOCYTES_88
37.2
MONOCYTES_89
37.1
MONOCYTES_90
36.9
MONOCYTES_91
31.2
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Non-classical monocyte TPM: 60.5
Samples: 90
Max TPM: 79.2
Min TPM: 44.2
M2_1
79.2
M2_2
77.1
M2_3
75.8
M2_4
75.1
M2_5
72.7
M2_6
72.7
M2_7
72.4
M2_8
70.5
M2_9
70.0
M2_10
69.7
M2_11
69.5
M2_12
69.4
M2_13
69.0
M2_14
68.9
M2_15
68.6
M2_16
68.5
M2_17
68.0
M2_18
67.8
M2_19
67.7
M2_20
67.5
M2_21
67.3
M2_22
67.1
M2_23
66.9
M2_24
66.8
M2_25
66.0
M2_26
65.4
M2_27
65.2
M2_28
64.8
M2_29
64.8
M2_30
64.6
M2_31
64.6
M2_32
64.5
M2_33
64.1
M2_34
63.8
M2_35
62.7
M2_36
62.3
M2_37
62.2
M2_38
61.9
M2_39
61.2
M2_40
60.7
M2_41
60.7
M2_42
60.6
M2_43
60.5
M2_44
60.1
M2_45
59.9
M2_46
59.9
M2_47
59.8
M2_48
59.6
M2_49
59.5
M2_50
59.4
M2_51
58.9
M2_52
58.6
M2_53
58.0
M2_54
58.0
M2_55
57.3
M2_56
57.1
M2_57
57.1
M2_58
56.8
M2_59
56.7
M2_60
56.6
M2_61
56.5
M2_62
56.4
M2_63
56.1
M2_64
56.0
M2_65
55.8
M2_66
55.3
M2_67
55.2
M2_68
54.6
M2_69
54.2
M2_70
54.2
M2_71
54.1
M2_72
53.8
M2_73
53.6
M2_74
53.5
M2_75
53.0
M2_76
53.0
M2_77
52.9
M2_78
52.3
M2_79
51.9
M2_80
51.8
M2_81
50.6
M2_82
50.5
M2_83
50.4
M2_84
48.9
M2_85
48.9
M2_86
47.5
M2_87
46.8
M2_88
46.0
M2_89
45.7
M2_90
44.2
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