A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
26.9
nTPM
Monaco:
9.6
nTPM
Schmiedel:
82.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.9
HPA sample
nTPM
NK-cell nTPM: 26.9
Samples: 6
Max nTPM: 41.4
Min nTPM: 14.3
P10809_1013
19.3
P10809_1033
31.9
P10809_1052
21.7
P10809_1071
14.3
P10809_1093
32.7
P10809_1103
41.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.6
Monaco sample
nTPM
NK-cell nTPM: 9.6
Samples: 4
Max nTPM: 12.2
Min nTPM: 5.8
RHH5316_R3683
10.7
RHH5224_R3596
12.2
RHH5253_R3625
5.8
RHH5282_R3654
9.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.6
Schmiedel sample id
TPM
NK-cell TPM: 82.6
Samples: 90
Max TPM: 115.5
Min TPM: 57.6
NK_1
115.5
NK_2
113.1
NK_3
106.2
NK_4
105.5
NK_5
104.5
NK_6
104.1
NK_7
103.1
NK_8
101.5
NK_9
100.9
NK_10
100.2
NK_11
100.0
NK_12
98.0
NK_13
97.6
NK_14
97.3
NK_15
96.6
NK_16
95.1
NK_17
92.9
NK_18
92.8
NK_19
92.2
NK_20
91.6
NK_21
90.2
NK_22
89.7
NK_23
89.6
NK_24
89.5
NK_25
89.4
NK_26
89.1
NK_27
88.6
NK_28
88.4
NK_29
88.2
NK_30
88.0
NK_31
87.9
NK_32
86.8
NK_33
86.0
NK_34
85.9
NK_35
85.9
NK_36
85.9
NK_37
84.9
NK_38
84.8
NK_39
84.5
NK_40
83.7
NK_41
82.4
NK_42
82.3
NK_43
82.0
NK_44
81.7
NK_45
81.5
NK_46
81.1
NK_47
80.8
NK_48
80.6
NK_49
80.4
NK_50
80.1
NK_51
79.7
NK_52
79.7
NK_53
79.1
NK_54
78.8
NK_55
78.8
NK_56
78.6
NK_57
77.7
NK_58
77.7
NK_59
77.6
NK_60
77.0
NK_61
76.9
NK_62
76.6
NK_63
76.5
NK_64
76.0
NK_65
75.9
NK_66
75.8
NK_67
75.0
NK_68
73.6
NK_69
73.5
NK_70
73.3
NK_71
72.4
NK_72
71.8
NK_73
71.6
NK_74
71.0
NK_75
70.6
NK_76
70.5
NK_77
70.4
NK_78
69.8
NK_79
69.6
NK_80
69.2
NK_81
67.5
NK_82
65.9
NK_83
65.0
NK_84
64.6
NK_85
63.0
NK_86
62.7
NK_87
60.4
NK_88
59.6
NK_89
58.2
NK_90
57.6
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
