MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.6 nTPM
HPA Brain:47.0 nTPM
GTEx:10.6 nTPM
FANTOM5:12.5 Scaled Tags Per Million
Pig:11.5 nTPM
Mouse:10.8 nTPM
Allen mouse:2.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 47.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.8
2019 Male, age 18, unknown 50.2
2219 Male, age 76, both hemispheres 45.3
2586 Male, age 75, left hemisphere 39.0
1827 Male, age 72, unknown 36.5
1870 Female, age 42, unknown 33.9
1833 Male, age 53, unknown 33.5
2411 Female, age 72, unknown 33.3
1830 Male, age 51, unknown 32.7
2828 Female, age 72, unknown 32.6
2666 Male, age 74, left hemisphere 30.5
Dorsal raphe nucleus
nTPM: 36.8
2047 Male, age 72, unknown 40.3
1828 Male, age 53, unknown 40.0
2298 Female, age 72, unknown 36.0
2016 Female, age 72, unknown 35.3
2750 Male, age 76, both hemispheres 32.2
Inferior colliculus
nTPM: 38.8
2097 Female, age 72, unknown 42.5
1890 Male, age 53, unknown 39.6
2849 Male, age 72, unknown 38.7
1848 Female, age 42, unknown 34.4
Median raphe nucleus
nTPM: 31.4
2220 Male, age 76, midline 31.4
Periaquaductal grey, anterior
nTPM: 47.0
2502 Female, age 75, unknown 58.6
1795 Male, age 51, unknown 48.3
1947 Male, age 18, unknown 34.1
Periaquaductal grey, dorsal
nTPM: 36.2
1840 Male, age 53, unknown 39.9
1831 Male, age 72, unknown 39.8
2464 Female, age 72, unknown 38.0
2850 Male, age 76, both hemispheres 27.2
Periaquaductal grey, lateral
nTPM: 36.0
2140 Male, age 76, both hemispheres 37.6
2053 Male, age 18, unknown 35.2
2272 Male, age 74, both hemispheres 35.1
Pretectal area
nTPM: 43.7
2667 Female, age 75, unknown 69.1
1944 Female, age 72, unknown 51.6
1816 Male, age 51, unknown 50.2
2224 Female, age 72, unknown 43.9
2007 Male, age 72, unknown 42.7
2273 Male, age 74, both hemispheres 41.9
2316 Male, age 76, right hemisphere 39.9
2407 Male, age 75, both hemispheres 38.4
1817 Female, age 42, unknown 36.7
1815 Male, age 53, unknown 35.7
2825 Male, age 18, unknown 30.5
Red nucleus
nTPM: 32.0
2785 Male, age 18, unknown 42.2
2584 Male, age 75, left hemisphere 39.2
2588 Male, age 74, left hemisphere 38.5
2823 Male, age 76, right hemisphere 36.3
2769 Male, age 72, unknown 32.4
1904 Male, age 53, unknown 31.7
2227 Male, age 72, unknown 30.6
1954 Female, age 42, unknown 28.9
2503 Female, age 72, unknown 26.6
1865 Male, age 51, unknown 26.5
1821 Female, age 72, unknown 25.6
2725 Female, age 75, unknown 25.1
Substantia nigra
nTPM: 38.4
1916 Female, age 42, unknown 46.3
1851 Male, age 51, unknown 41.0
2665 Male, age 74, both hemispheres 40.0
2590 Female, age 75, unknown 39.0
1941 Male, age 53, unknown 38.5
2409 Female, age 72, unknown 37.9
2241 Male, age 72, unknown 36.9
1889 Female, age 72, unknown 35.8
2699 Male, age 18, unknown 34.7
2583 Male, age 75, right hemisphere 33.5
Superior colliculus
nTPM: 37.0
2664 Male, age 75, both hemispheres 48.0
2087 Female, age 72, unknown 45.6
2261 Male, age 18, unknown 41.4
2587 Male, age 74, left hemisphere 38.4
1895 Male, age 76, right hemisphere 38.0
1839 Male, age 51, unknown 37.9
1796 Male, age 53, unknown 37.4
1913 Female, age 42, unknown 31.4
1995 Male, age 72, unknown 30.5
2668 Female, age 75, unknown 21.3
Ventral tegmental area
nTPM: 35.1
1915 Female, age 42, unknown 38.3
2218 Male, age 76, both hemispheres 37.5
2410 Female, age 72, unknown 36.8
2021 Male, age 53, unknown 34.9
1942 Male, age 51, unknown 33.1
2223 Female, age 72, unknown 30.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.6
Samples: 183

Max nTPM: 26.6
Min nTPM: 3.2
Std nTPM: 4.3
Median nTPM: 9.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 26.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 24.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 22.7
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 21.5
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 20.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 20.1
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 20.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 19.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 19.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 18.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 17.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.5
FF:10158-103A5 76 years, female 12.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.3
Samples: 4

Max nTPM: 10.5
Min nTPM: 3.8
Sample A Female 9.7
Sample B Female 5.1
Sample C Male 10.5
Sample D Male 3.8
Midbrain
nTPM: 10.0
Samples: 4

Max nTPM: 18.0
Min nTPM: 3.6
Sample A Female 3.6
Sample B Female 6.2
Sample C Male 18.0
Sample D Male 12.1
Periaqueductal gray
nTPM: 6.6
Samples: 3

Max nTPM: 8.2
Min nTPM: 4.8
Sample B Female 6.9
Sample C Male 8.2
Sample D Male 4.8
Superior colliculi
nTPM: 11.5
Samples: 4

Max nTPM: 18.8
Min nTPM: 6.9
Sample A Female 9.8
Sample B Female 6.9
Sample C Male 18.8
Sample D Male 10.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 10.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.8
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.6
Sample A Male 11.6
Sample B Male 9.6
Sample C Female 11.1
Sample D Female 11.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
68798753 Antisense, RP_050217_01_C01, Mouse strain C57BL/6J (56 days, male) 2.1

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