On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
257.6
nTPM
HPA Brain:
379.2
nTPM
GTEx:
257.6
nTPM
FANTOM5:
406.3
Scaled Tags Per Million
Mouse:
98.0
nTPM
Rat:
105.7
nTPM
Pig:
100.2
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
379.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 331.3
1833
Male, age 53, unknown
351.2
1830
Male, age 51, unknown
350.1
2586
Male, age 75, left hemisphere
342.5
2411
Female, age 72, unknown
338.2
2666
Male, age 74, left hemisphere
335.7
1870
Female, age 42, unknown
328.7
2019
Male, age 18, unknown
323.4
2828
Female, age 72, unknown
318.7
2219
Male, age 76, both hemispheres
316.8
1827
Male, age 72, unknown
307.9
Dorsal raphe nucleus nTPM: 311.3
2750
Male, age 76, both hemispheres
368.5
1828
Male, age 53, unknown
320.3
2047
Male, age 72, unknown
317.2
2016
Female, age 72, unknown
312.9
2298
Female, age 72, unknown
237.3
Inferior colliculus nTPM: 280.4
1848
Female, age 42, unknown
299.1
1890
Male, age 53, unknown
293.7
2849
Male, age 72, unknown
284.8
2097
Female, age 72, unknown
244.0
Median raphe nucleus nTPM: 338.7
2220
Male, age 76, midline
338.7
Periaquaductal grey, anterior nTPM: 266.1
1947
Male, age 18, unknown
314.1
1795
Male, age 51, unknown
249.4
2502
Female, age 75, unknown
234.7
Periaquaductal grey, dorsal nTPM: 279.4
2850
Male, age 76, both hemispheres
303.6
2464
Female, age 72, unknown
296.6
1831
Male, age 72, unknown
267.5
1840
Male, age 53, unknown
249.7
Periaquaductal grey, lateral nTPM: 255.1
2140
Male, age 76, both hemispheres
279.9
2053
Male, age 18, unknown
246.8
2272
Male, age 74, both hemispheres
238.4
Pretectal area nTPM: 277.3
1815
Male, age 53, unknown
321.0
2007
Male, age 72, unknown
293.3
1817
Female, age 42, unknown
287.1
2667
Female, age 75, unknown
279.8
1944
Female, age 72, unknown
278.0
2407
Male, age 75, both hemispheres
275.3
1816
Male, age 51, unknown
268.3
2825
Male, age 18, unknown
267.5
2316
Male, age 76, right hemisphere
266.8
2224
Female, age 72, unknown
258.7
2273
Male, age 74, both hemispheres
254.5
Red nucleus nTPM: 362.8
2503
Female, age 72, unknown
414.5
2588
Male, age 74, left hemisphere
413.2
1865
Male, age 51, unknown
393.3
1821
Female, age 72, unknown
392.8
2823
Male, age 76, right hemisphere
369.8
1904
Male, age 53, unknown
365.7
1954
Female, age 42, unknown
354.8
2725
Female, age 75, unknown
353.1
2227
Male, age 72, unknown
349.3
2769
Male, age 72, unknown
341.1
2785
Male, age 18, unknown
324.5
2584
Male, age 75, left hemisphere
281.0
Substantia nigra nTPM: 379.2
1916
Female, age 42, unknown
468.2
2699
Male, age 18, unknown
433.5
2409
Female, age 72, unknown
414.8
1851
Male, age 51, unknown
401.5
1941
Male, age 53, unknown
396.1
2241
Male, age 72, unknown
383.0
2583
Male, age 75, right hemisphere
356.2
2590
Female, age 75, unknown
339.6
1889
Female, age 72, unknown
327.9
2665
Male, age 74, both hemispheres
270.9
Superior colliculus nTPM: 297.4
2668
Female, age 75, unknown
369.8
1913
Female, age 42, unknown
352.8
1995
Male, age 72, unknown
317.8
2587
Male, age 74, left hemisphere
308.9
1895
Male, age 76, right hemisphere
305.9
1839
Male, age 51, unknown
286.9
2087
Female, age 72, unknown
278.6
1796
Male, age 53, unknown
268.0
2261
Male, age 18, unknown
260.1
2664
Male, age 75, both hemispheres
225.6
Ventral tegmental area nTPM: 346.1
2218
Male, age 76, both hemispheres
402.7
1915
Female, age 42, unknown
374.0
2410
Female, age 72, unknown
358.6
2223
Female, age 72, unknown
335.7
1942
Male, age 51, unknown
312.6
2021
Male, age 53, unknown
293.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
257.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 257.6
Samples: 183
Max nTPM: 572.4
Min nTPM: 121.5
Std nTPM: 67.1
Median nTPM: 248.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
572.4
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
570.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
466.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
457.3
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
425.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
421.5
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
415.1
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
415.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
414.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
398.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
386.2
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
351.4
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
343.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
337.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
337.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
331.9
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
326.6
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
324.6
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
324.2
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
322.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
317.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
313.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
312.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
310.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
307.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
306.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
305.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
303.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
301.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
301.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
301.0
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
300.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
299.7
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
298.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
298.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
296.5
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
296.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
295.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
295.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
294.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
294.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
294.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
293.0
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
292.7
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
286.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
285.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
285.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
284.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
281.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
280.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
277.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
277.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
275.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
275.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
275.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
273.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
272.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
271.6
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
271.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
270.8
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
268.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
268.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
267.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
267.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
266.6
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
265.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
265.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
264.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
264.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
262.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
262.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
262.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
261.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
260.4
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
260.3
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
260.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
258.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
258.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
257.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
256.6
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
256.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
256.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
253.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
253.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
252.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
251.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
251.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
250.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
250.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
250.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
249.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
248.6
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
248.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
247.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
245.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
244.3
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
243.4
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
243.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
243.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
242.7
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
241.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
241.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
241.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
241.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
240.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
240.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
239.3
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
238.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
238.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
237.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
236.8
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
236.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
236.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
235.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
235.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
233.4
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
233.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
233.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
232.7
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
231.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
231.3
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
230.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
228.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
228.0
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
227.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
227.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
226.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
226.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
226.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
225.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
225.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
225.5
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
224.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
224.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
223.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
222.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
222.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
217.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
217.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
216.7
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
215.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
215.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
213.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
212.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
212.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
211.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
211.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
210.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
210.3
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
209.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
205.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
205.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
204.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
203.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
201.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
200.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
199.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
196.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
196.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
193.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
191.8
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
191.1
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
189.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
188.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
187.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
185.3
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
184.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
183.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
182.2
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
180.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
179.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
175.7
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
175.4
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
174.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
167.9
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
163.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
157.2
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
154.7
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
151.3
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
149.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
149.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
125.6
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
121.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
100.2
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 100.2
Samples: 3
Max nTPM: 113.5
Min nTPM: 88.7
Sample A
Female
98.3
Sample B
Female
88.7
Sample C
Male
113.5
Midbrain nTPM: 91.7
Samples: 3
Max nTPM: 107.7
Min nTPM: 83.5
Sample B
Female
84.0
Sample C
Male
107.7
Sample D
Male
83.5
Periaqueductal gray nTPM: 78.3
Samples: 3
Max nTPM: 82.6
Min nTPM: 74.3
Sample B
Female
78.1
Sample C
Male
82.6
Sample D
Male
74.3
Superior colliculi nTPM: 86.6
Samples: 4
Max nTPM: 112.5
Min nTPM: 59.4
Sample A
Female
76.1
Sample B
Female
59.4
Sample C
Male
112.5
Sample D
Male
98.5
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
98.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 98.1
Samples: 4
Max nTPM: 113.7
Min nTPM: 71.5
Sample A
71.5
Sample B
101.3
Sample C
105.7
Sample D
113.7
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
105.7
Rat sample
Sample description
nTPM
Midbrain nTPM: 105.7
Samples: 4
Max nTPM: 109.9
Min nTPM: 101.6
Sample A
101.8
Sample A
109.9
Sample A
101.6
Sample A
109.6
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The Human Protein Atlas project is funded
