A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.1
nTPM
Monaco:
11.6
nTPM
Schmiedel:
57.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.1
HPA sample
nTPM
Memory B-cell nTPM: 14.1
Samples: 6
Max nTPM: 32.3
Min nTPM: 1.8
P10809_1017
13.3
P10809_1025
10.2
P10809_1044
1.8
P10809_1063
15.8
P10809_1092
11.4
P10809_1105
32.3
Naive B-cell nTPM: 10.2
Samples: 6
Max nTPM: 16.2
Min nTPM: 4.6
P10809_1011
5.8
P10809_1029
4.6
P10809_1048
10.1
P10809_1067
16.2
P10809_1091
8.8
P10809_1104
15.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 10.8
Samples: 4
Max nTPM: 18.6
Min nTPM: 6.2
RHH5310_R3677
10.5
RHH5218_R3590
7.9
RHH5247_R3619
18.6
RHH5276_R3648
6.2
Naive B-cell nTPM: 6.8
Samples: 4
Max nTPM: 9.1
Min nTPM: 4.9
RHH5308_R3675
7.1
RHH5216_R3588
5.9
RHH5245_R3617
9.1
RHH5274_R3646
4.9
Non-switched memory B-cell nTPM: 8.0
Samples: 4
Max nTPM: 9.8
Min nTPM: 6.4
RHH5309_R3676
7.9
RHH5217_R3589
6.4
RHH5246_R3618
7.9
RHH5275_R3647
9.8
Plasmablast nTPM: 4.9
Samples: 4
Max nTPM: 7.2
Min nTPM: 2.4
RHH5312_R3679
4.4
RHH5220_R3592
7.2
RHH5249_R3621
5.4
RHH5278_R3650
2.4
Switched memory B-cell nTPM: 11.6
Samples: 4
Max nTPM: 13.7
Min nTPM: 6.7
RHH5311_R3678
13.4
RHH5219_R3591
13.7
RHH5248_R3620
6.7
RHH5277_R3649
12.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.2
Schmiedel sample id
TPM
Naive B-cell TPM: 57.2
Samples: 91
Max TPM: 82.9
Min TPM: 32.9
B_CELL_NAIVE_1
82.9
B_CELL_NAIVE_2
76.4
B_CELL_NAIVE_3
73.6
B_CELL_NAIVE_4
73.1
B_CELL_NAIVE_5
68.6
B_CELL_NAIVE_6
67.9
B_CELL_NAIVE_7
67.7
B_CELL_NAIVE_8
67.1
B_CELL_NAIVE_9
67.0
B_CELL_NAIVE_10
66.2
B_CELL_NAIVE_11
66.0
B_CELL_NAIVE_12
65.9
B_CELL_NAIVE_13
64.9
B_CELL_NAIVE_14
64.0
B_CELL_NAIVE_15
63.9
B_CELL_NAIVE_16
63.9
B_CELL_NAIVE_17
63.8
B_CELL_NAIVE_18
63.5
B_CELL_NAIVE_19
62.9
B_CELL_NAIVE_20
62.7
B_CELL_NAIVE_21
62.7
B_CELL_NAIVE_22
62.2
B_CELL_NAIVE_23
62.1
B_CELL_NAIVE_24
61.8
B_CELL_NAIVE_25
61.5
B_CELL_NAIVE_26
61.3
B_CELL_NAIVE_27
61.3
B_CELL_NAIVE_28
61.3
B_CELL_NAIVE_29
61.1
B_CELL_NAIVE_30
61.0
B_CELL_NAIVE_31
60.9
B_CELL_NAIVE_32
60.8
B_CELL_NAIVE_33
60.8
B_CELL_NAIVE_34
59.7
B_CELL_NAIVE_35
59.4
B_CELL_NAIVE_36
59.1
B_CELL_NAIVE_37
59.0
B_CELL_NAIVE_38
58.4
B_CELL_NAIVE_39
57.7
B_CELL_NAIVE_40
57.6
B_CELL_NAIVE_41
57.5
B_CELL_NAIVE_42
57.5
B_CELL_NAIVE_43
57.4
B_CELL_NAIVE_44
57.0
B_CELL_NAIVE_45
56.9
B_CELL_NAIVE_46
56.8
B_CELL_NAIVE_47
56.3
B_CELL_NAIVE_48
56.2
B_CELL_NAIVE_49
56.1
B_CELL_NAIVE_50
56.1
B_CELL_NAIVE_51
55.9
B_CELL_NAIVE_52
55.7
B_CELL_NAIVE_53
55.4
B_CELL_NAIVE_54
55.2
B_CELL_NAIVE_55
55.0
B_CELL_NAIVE_56
54.8
B_CELL_NAIVE_57
54.5
B_CELL_NAIVE_58
54.4
B_CELL_NAIVE_59
54.0
B_CELL_NAIVE_60
53.9
B_CELL_NAIVE_61
53.8
B_CELL_NAIVE_62
53.8
B_CELL_NAIVE_63
53.6
B_CELL_NAIVE_64
53.6
B_CELL_NAIVE_65
53.5
B_CELL_NAIVE_66
53.1
B_CELL_NAIVE_67
52.2
B_CELL_NAIVE_68
52.0
B_CELL_NAIVE_69
51.9
B_CELL_NAIVE_70
51.9
B_CELL_NAIVE_71
51.7
B_CELL_NAIVE_72
51.3
B_CELL_NAIVE_73
51.0
B_CELL_NAIVE_74
50.7
B_CELL_NAIVE_75
50.7
B_CELL_NAIVE_76
50.2
B_CELL_NAIVE_77
50.2
B_CELL_NAIVE_78
49.8
B_CELL_NAIVE_79
49.4
B_CELL_NAIVE_80
48.4
B_CELL_NAIVE_81
47.5
B_CELL_NAIVE_82
47.5
B_CELL_NAIVE_83
46.4
B_CELL_NAIVE_84
46.4
B_CELL_NAIVE_85
46.1
B_CELL_NAIVE_86
46.0
B_CELL_NAIVE_87
45.7
B_CELL_NAIVE_88
45.7
B_CELL_NAIVE_89
44.8
B_CELL_NAIVE_90
44.3
B_CELL_NAIVE_91
32.9
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