A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.7
nTPM
Monaco:
14.5
nTPM
Schmiedel:
125.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.7
HPA sample
nTPM
Classical monocyte nTPM: 16.6
Samples: 6
Max nTPM: 29.7
Min nTPM: 2.6
P10809_1003
2.6
P10809_1020
10.0
P10809_1039
10.6
P10809_1058
29.7
P10809_1080
23.8
P10809_1107
23.0
Intermediate monocyte nTPM: 17.7
Samples: 6
Max nTPM: 26.0
Min nTPM: 10.6
P10809_1004
12.4
P10809_1023
10.6
P10809_1042
15.1
P10809_1061
17.3
P10809_1081
26.0
P10809_1108
25.0
Non-classical monocyte nTPM: 17.7
Samples: 5
Max nTPM: 27.4
Min nTPM: 9.2
P10809_1005
9.2
P10809_1053
12.0
P10809_1072
15.9
P10809_1082
27.4
P10809_1109
24.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.5
Monaco sample
nTPM
Classical monocyte nTPM: 14.5
Samples: 4
Max nTPM: 16.6
Min nTPM: 11.3
RHH5313_R3680
16.0
RHH5221_R3593
16.6
RHH5250_R3622
11.3
RHH5279_R3651
13.9
Intermediate monocyte nTPM: 13.8
Samples: 4
Max nTPM: 18.9
Min nTPM: 7.2
RHH5314_R3681
10.7
RHH5222_R3594
18.9
RHH5251_R3623
18.3
RHH5280_R3652
7.2
Non-classical monocyte nTPM: 9.6
Samples: 4
Max nTPM: 12.8
Min nTPM: 6.5
RHH5315_R3682
8.6
RHH5223_R3595
12.8
RHH5252_R3624
10.3
RHH5281_R3653
6.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
125.5
Schmiedel sample id
TPM
Classical monocyte TPM: 125.1
Samples: 91
Max TPM: 177.0
Min TPM: 66.4
MONOCYTES_1
177.0
MONOCYTES_2
176.7
MONOCYTES_3
169.9
MONOCYTES_4
168.1
MONOCYTES_5
165.8
MONOCYTES_6
162.7
MONOCYTES_7
159.8
MONOCYTES_8
159.1
MONOCYTES_9
158.9
MONOCYTES_10
156.8
MONOCYTES_11
155.7
MONOCYTES_12
154.9
MONOCYTES_13
154.4
MONOCYTES_14
154.3
MONOCYTES_15
153.1
MONOCYTES_16
152.1
MONOCYTES_17
149.6
MONOCYTES_18
148.9
MONOCYTES_19
148.3
MONOCYTES_20
148.1
MONOCYTES_21
147.2
MONOCYTES_22
145.8
MONOCYTES_23
145.4
MONOCYTES_24
144.8
MONOCYTES_25
143.7
MONOCYTES_26
143.4
MONOCYTES_27
143.3
MONOCYTES_28
141.6
MONOCYTES_29
140.9
MONOCYTES_30
140.3
MONOCYTES_31
139.6
MONOCYTES_32
139.4
MONOCYTES_33
139.1
MONOCYTES_34
137.5
MONOCYTES_35
136.3
MONOCYTES_36
135.5
MONOCYTES_37
135.2
MONOCYTES_38
133.1
MONOCYTES_39
131.2
MONOCYTES_40
131.1
MONOCYTES_41
129.4
MONOCYTES_42
128.8
MONOCYTES_43
128.7
MONOCYTES_44
128.0
MONOCYTES_45
127.7
MONOCYTES_46
124.6
MONOCYTES_47
124.3
MONOCYTES_48
121.9
MONOCYTES_49
120.8
MONOCYTES_50
119.9
MONOCYTES_51
119.1
MONOCYTES_52
118.3
MONOCYTES_53
117.8
MONOCYTES_54
117.3
MONOCYTES_55
117.3
MONOCYTES_56
116.0
MONOCYTES_57
115.5
MONOCYTES_58
115.2
MONOCYTES_59
112.7
MONOCYTES_60
111.9
MONOCYTES_61
111.9
MONOCYTES_62
110.4
MONOCYTES_63
110.4
MONOCYTES_64
108.7
MONOCYTES_65
108.0
MONOCYTES_66
107.7
MONOCYTES_67
107.2
MONOCYTES_68
106.9
MONOCYTES_69
105.8
MONOCYTES_70
104.8
MONOCYTES_71
103.9
MONOCYTES_72
103.0
MONOCYTES_73
99.6
MONOCYTES_74
99.2
MONOCYTES_75
99.1
MONOCYTES_76
98.9
MONOCYTES_77
97.4
MONOCYTES_78
96.7
MONOCYTES_79
96.4
MONOCYTES_80
96.3
MONOCYTES_81
93.2
MONOCYTES_82
90.1
MONOCYTES_83
89.3
MONOCYTES_84
88.5
MONOCYTES_85
87.7
MONOCYTES_86
87.0
MONOCYTES_87
84.7
MONOCYTES_88
82.2
MONOCYTES_89
81.8
MONOCYTES_90
74.1
MONOCYTES_91
66.4
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Non-classical monocyte TPM: 125.5
Samples: 90
Max TPM: 165.4
Min TPM: 84.7
M2_1
165.4
M2_2
163.4
M2_3
153.1
M2_4
152.6
M2_5
152.1
M2_6
150.2
M2_7
148.6
M2_8
148.4
M2_9
147.2
M2_10
146.1
M2_11
146.0
M2_12
145.7
M2_13
143.8
M2_14
142.2
M2_15
141.6
M2_16
141.4
M2_17
140.1
M2_18
138.6
M2_19
138.2
M2_20
137.2
M2_21
135.3
M2_22
134.8
M2_23
134.1
M2_24
134.0
M2_25
133.3
M2_26
133.0
M2_27
132.8
M2_28
131.6
M2_29
130.8
M2_30
130.3
M2_31
129.6
M2_32
128.3
M2_33
128.1
M2_34
128.0
M2_35
127.6
M2_36
126.5
M2_37
126.1
M2_38
125.7
M2_39
125.4
M2_40
124.9
M2_41
124.6
M2_42
124.6
M2_43
124.6
M2_44
123.2
M2_45
122.8
M2_46
122.8
M2_47
122.6
M2_48
121.9
M2_49
121.7
M2_50
121.7
M2_51
121.4
M2_52
121.2
M2_53
120.6
M2_54
120.6
M2_55
120.1
M2_56
120.1
M2_57
120.1
M2_58
120.1
M2_59
120.0
M2_60
119.7
M2_61
118.3
M2_62
118.2
M2_63
117.8
M2_64
117.3
M2_65
116.7
M2_66
116.2
M2_67
115.8
M2_68
115.5
M2_69
115.4
M2_70
115.2
M2_71
115.1
M2_72
114.7
M2_73
114.7
M2_74
113.5
M2_75
113.4
M2_76
113.1
M2_77
112.4
M2_78
111.5
M2_79
110.7
M2_80
109.9
M2_81
109.7
M2_82
108.6
M2_83
108.0
M2_84
107.6
M2_85
103.9
M2_86
102.6
M2_87
100.8
M2_88
98.0
M2_89
95.4
M2_90
84.7
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