A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.0
nTPM
Monaco:
8.2
nTPM
Schmiedel:
86.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.0
HPA sample
nTPM
NK-cell nTPM: 12.0
Samples: 6
Max nTPM: 21.4
Min nTPM: 1.2
P10809_1013
11.6
P10809_1033
1.2
P10809_1052
10.3
P10809_1071
21.4
P10809_1093
13.1
P10809_1103
14.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.2
Monaco sample
nTPM
NK-cell nTPM: 8.1
Samples: 4
Max nTPM: 11.5
Min nTPM: 5.6
RHH5316_R3683
7.6
RHH5224_R3596
11.5
RHH5253_R3625
5.6
RHH5282_R3654
7.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.2
Schmiedel sample id
TPM
NK-cell TPM: 86.2
Samples: 90
Max TPM: 145.0
Min TPM: 59.9
NK_1
145.0
NK_2
128.4
NK_3
124.7
NK_4
118.3
NK_5
108.9
NK_6
107.0
NK_7
105.6
NK_8
102.6
NK_9
102.4
NK_10
101.5
NK_11
100.4
NK_12
100.1
NK_13
99.2
NK_14
99.1
NK_15
98.6
NK_16
98.2
NK_17
97.4
NK_18
97.4
NK_19
96.8
NK_20
96.7
NK_21
96.5
NK_22
94.7
NK_23
94.7
NK_24
94.6
NK_25
94.2
NK_26
93.2
NK_27
93.1
NK_28
92.7
NK_29
92.3
NK_30
92.0
NK_31
91.4
NK_32
91.2
NK_33
89.3
NK_34
89.0
NK_35
88.3
NK_36
87.4
NK_37
87.3
NK_38
85.9
NK_39
85.7
NK_40
85.2
NK_41
84.0
NK_42
83.7
NK_43
83.5
NK_44
82.8
NK_45
82.5
NK_46
82.4
NK_47
82.2
NK_48
82.1
NK_49
81.7
NK_50
81.3
NK_51
81.1
NK_52
81.1
NK_53
80.9
NK_54
79.9
NK_55
79.7
NK_56
79.7
NK_57
79.6
NK_58
79.4
NK_59
79.1
NK_60
78.7
NK_61
78.7
NK_62
78.2
NK_63
78.2
NK_64
78.1
NK_65
78.0
NK_66
77.5
NK_67
77.1
NK_68
77.1
NK_69
76.9
NK_70
76.8
NK_71
76.2
NK_72
76.0
NK_73
75.4
NK_74
74.9
NK_75
74.2
NK_76
74.0
NK_77
73.6
NK_78
73.6
NK_79
73.5
NK_80
73.0
NK_81
71.5
NK_82
71.4
NK_83
71.4
NK_84
70.6
NK_85
68.7
NK_86
64.8
NK_87
64.0
NK_88
62.0
NK_89
60.6
NK_90
59.9
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