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UCHL1
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  • SUMMARY

  • TISSUE

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  • SUBCELL

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  • BLOOD

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  • STRUCTURE

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  • UCHL1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:407.8 nTPM
FANTOM5:746.9 Scaled Tags Per Million
Pig:634.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA005993Antibody CAB002580
Glial cells LowNot detected
Neuronal cells -High




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

407.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 407.8
Samples: 300

Max nTPM: 2816.8
Min nTPM: 28.6
Std nTPM: 315.6
Median nTPM: 357.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 2816.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1370.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 1333.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1171.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1088.9
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1083.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1011.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 979.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 976.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 975.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 969.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 964.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 943.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 940.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 918.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 885.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 882.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 871.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 864.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 862.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 860.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 858.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 854.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 853.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 848.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 838.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 836.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 835.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 833.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 833.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 829.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 821.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 818.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 817.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 816.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 815.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 808.2
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 801.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 798.1
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 789.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 788.9
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 782.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 781.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 777.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 765.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 758.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 753.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 750.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 743.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 734.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 733.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 730.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 725.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 724.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 722.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 701.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 696.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 683.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 678.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 677.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 662.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 657.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 648.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 647.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 645.4
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 629.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 620.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 618.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 607.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 604.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 585.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 582.9
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 581.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 581.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 572.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 566.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 564.4
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 560.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 555.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 553.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 552.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 552.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 550.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 549.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 549.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 546.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 544.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 538.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 537.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 534.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 532.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 528.3
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 519.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 519.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 518.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 516.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 516.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 516.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 514.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 510.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 497.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 497.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 494.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 492.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 491.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 489.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 485.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 484.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 483.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 482.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 476.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 473.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 473.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 470.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 470.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 466.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 465.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 458.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 457.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 457.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 444.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 439.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 437.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 434.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 433.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 431.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 431.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 429.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 429.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 428.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 428.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 421.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 416.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 414.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 409.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 407.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 403.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 396.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 388.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 386.1
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 385.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 374.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 373.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 373.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 371.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 370.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 365.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 363.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 361.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 358.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 355.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 351.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 349.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 345.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 345.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 342.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 339.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 337.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 332.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 332.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 329.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 321.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 316.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 314.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 310.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 301.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 292.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 291.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 290.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 288.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 280.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 278.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 271.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 269.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 268.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 265.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 263.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 262.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 260.0
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 258.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 253.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 251.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 241.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 240.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 237.9
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 231.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 231.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 229.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 229.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 224.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 218.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 213.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 211.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 204.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 201.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 200.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 199.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 197.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 197.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 196.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 187.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 185.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 185.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 180.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 179.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 175.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 173.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 173.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 173.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 172.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 172.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 172.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 171.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 170.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 169.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 168.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 168.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 167.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 165.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 165.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 164.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 162.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 161.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 158.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 158.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 155.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 149.3
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 147.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 146.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 143.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 140.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 140.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 140.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 139.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 137.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 135.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 134.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 130.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 128.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 128.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 125.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 125.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 124.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 120.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 120.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 117.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 116.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 114.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 114.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 113.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 113.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 111.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 108.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 102.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 98.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 97.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 95.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 95.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 94.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 91.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 90.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 88.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 88.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 87.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 86.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 85.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 84.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 83.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 82.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 81.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 77.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 76.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 75.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 73.9
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 71.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 70.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 70.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 69.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 68.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 68.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 67.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 66.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 65.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 65.0
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 64.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 63.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 61.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 58.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 58.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 58.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 51.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 49.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 47.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 47.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 44.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 43.6
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 42.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 36.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 32.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 28.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

746.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 746.9
FF:10164-103B2 76 years, female 746.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

634.1
Pig sample Sample description nTPM
Caudate
nTPM: 634.1
Samples: 4

Max nTPM: 724.7
Min nTPM: 563.5
Sample A Female 563.5
Sample B Female 652.8
Sample C Male 724.7
Sample D Male 595.5

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