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BETA
  • SUMMARY

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  • BRAIN

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  • RASA2
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:8.5 nTPM
Monaco:38.9 nTPM
Schmiedel:162.4 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

8.5
HPA sample nTPM
Memory B-cell
nTPM: 5.3
Samples: 6

Max nTPM: 8.6
Min nTPM: 1.8
P10809_1017 8.6
P10809_1025 4.8
P10809_1044 1.8
P10809_1063 3.1
P10809_1092 6.1
P10809_1105 7.5
Naive B-cell
nTPM: 8.5
Samples: 6

Max nTPM: 11.4
Min nTPM: 7.0
P10809_1011 9.3
P10809_1029 7.0
P10809_1048 11.4
P10809_1067 8.4
P10809_1091 7.0
P10809_1104 8.1

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

38.9
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 23.4
Samples: 4

Max nTPM: 28.2
Min nTPM: 21.1
RHH5310_R3677 21.9
RHH5218_R3590 22.3
RHH5247_R3619 21.1
RHH5276_R3648 28.2
Naive B-cell
nTPM: 38.9
Samples: 4

Max nTPM: 51.7
Min nTPM: 28.2
RHH5308_R3675 28.2
RHH5216_R3588 35.2
RHH5245_R3617 51.7
RHH5274_R3646 40.5
Non-switched memory B-cell
nTPM: 25.7
Samples: 4

Max nTPM: 34.6
Min nTPM: 18.4
RHH5309_R3676 22.6
RHH5217_R3589 27.0
RHH5246_R3618 18.4
RHH5275_R3647 34.6
Plasmablast
nTPM: 34.3
Samples: 4

Max nTPM: 38.7
Min nTPM: 30.1
RHH5312_R3679 38.7
RHH5220_R3592 31.4
RHH5249_R3621 30.1
RHH5278_R3650 37.2
Switched memory B-cell
nTPM: 24.8
Samples: 4

Max nTPM: 35.0
Min nTPM: 19.1
RHH5311_R3678 19.1
RHH5219_R3591 19.7
RHH5248_R3620 35.0
RHH5277_R3649 25.4

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

162.4
Schmiedel sample id TPM
Naive B-cell
TPM: 162.4
Samples: 91

Max TPM: 309.8
Min TPM: 101.7
B_CELL_NAIVE_1 309.8
B_CELL_NAIVE_2 308.5
B_CELL_NAIVE_3 274.0
B_CELL_NAIVE_4 257.7
B_CELL_NAIVE_5 253.6
B_CELL_NAIVE_6 246.3
B_CELL_NAIVE_7 231.3
B_CELL_NAIVE_8 214.2
B_CELL_NAIVE_9 209.2
B_CELL_NAIVE_10 208.7
B_CELL_NAIVE_11 205.3
B_CELL_NAIVE_12 195.2
B_CELL_NAIVE_13 189.2
B_CELL_NAIVE_14 188.3
B_CELL_NAIVE_15 185.4
B_CELL_NAIVE_16 184.5
B_CELL_NAIVE_17 179.2
B_CELL_NAIVE_18 177.8
B_CELL_NAIVE_19 177.2
B_CELL_NAIVE_20 177.1
B_CELL_NAIVE_21 176.7
B_CELL_NAIVE_22 176.7
B_CELL_NAIVE_23 173.3
B_CELL_NAIVE_24 172.1
B_CELL_NAIVE_25 171.8
B_CELL_NAIVE_26 171.0
B_CELL_NAIVE_27 170.4
B_CELL_NAIVE_28 169.9
B_CELL_NAIVE_29 167.9
B_CELL_NAIVE_30 166.7
B_CELL_NAIVE_31 166.4
B_CELL_NAIVE_32 164.9
B_CELL_NAIVE_33 164.7
B_CELL_NAIVE_34 164.5
B_CELL_NAIVE_35 163.0
B_CELL_NAIVE_36 162.5
B_CELL_NAIVE_37 161.3
B_CELL_NAIVE_38 158.6
B_CELL_NAIVE_39 158.0
B_CELL_NAIVE_40 157.9
B_CELL_NAIVE_41 157.3
B_CELL_NAIVE_42 155.2
B_CELL_NAIVE_43 154.6
B_CELL_NAIVE_44 154.3
B_CELL_NAIVE_45 154.3
B_CELL_NAIVE_46 153.7
B_CELL_NAIVE_47 153.4
B_CELL_NAIVE_48 153.0
B_CELL_NAIVE_49 151.6
B_CELL_NAIVE_50 151.3
B_CELL_NAIVE_51 150.7
B_CELL_NAIVE_52 150.1
B_CELL_NAIVE_53 149.2
B_CELL_NAIVE_54 149.1
B_CELL_NAIVE_55 148.8
B_CELL_NAIVE_56 148.6
B_CELL_NAIVE_57 147.9
B_CELL_NAIVE_58 147.5
B_CELL_NAIVE_59 145.4
B_CELL_NAIVE_60 145.0
B_CELL_NAIVE_61 143.4
B_CELL_NAIVE_62 142.7
B_CELL_NAIVE_63 142.0
B_CELL_NAIVE_64 141.8
B_CELL_NAIVE_65 141.0
B_CELL_NAIVE_66 139.9
B_CELL_NAIVE_67 139.1
B_CELL_NAIVE_68 139.0
B_CELL_NAIVE_69 137.6
B_CELL_NAIVE_70 137.4
B_CELL_NAIVE_71 137.2
B_CELL_NAIVE_72 136.6
B_CELL_NAIVE_73 135.7
B_CELL_NAIVE_74 134.6
B_CELL_NAIVE_75 132.9
B_CELL_NAIVE_76 132.6
B_CELL_NAIVE_77 132.5
B_CELL_NAIVE_78 132.3
B_CELL_NAIVE_79 131.5
B_CELL_NAIVE_80 130.5
B_CELL_NAIVE_81 130.2
B_CELL_NAIVE_82 126.2
B_CELL_NAIVE_83 125.9
B_CELL_NAIVE_84 125.7
B_CELL_NAIVE_85 124.1
B_CELL_NAIVE_86 120.4
B_CELL_NAIVE_87 119.5
B_CELL_NAIVE_88 115.8
B_CELL_NAIVE_89 111.2
B_CELL_NAIVE_90 103.6
B_CELL_NAIVE_91 101.7
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