A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.5
nTPM
Monaco:
38.9
nTPM
Schmiedel:
162.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.5
HPA sample
nTPM
Memory B-cell nTPM: 5.3
Samples: 6
Max nTPM: 8.6
Min nTPM: 1.8
P10809_1017
8.6
P10809_1025
4.8
P10809_1044
1.8
P10809_1063
3.1
P10809_1092
6.1
P10809_1105
7.5
Naive B-cell nTPM: 8.5
Samples: 6
Max nTPM: 11.4
Min nTPM: 7.0
P10809_1011
9.3
P10809_1029
7.0
P10809_1048
11.4
P10809_1067
8.4
P10809_1091
7.0
P10809_1104
8.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 23.4
Samples: 4
Max nTPM: 28.2
Min nTPM: 21.1
RHH5310_R3677
21.9
RHH5218_R3590
22.3
RHH5247_R3619
21.1
RHH5276_R3648
28.2
Naive B-cell nTPM: 38.9
Samples: 4
Max nTPM: 51.7
Min nTPM: 28.2
RHH5308_R3675
28.2
RHH5216_R3588
35.2
RHH5245_R3617
51.7
RHH5274_R3646
40.5
Non-switched memory B-cell nTPM: 25.7
Samples: 4
Max nTPM: 34.6
Min nTPM: 18.4
RHH5309_R3676
22.6
RHH5217_R3589
27.0
RHH5246_R3618
18.4
RHH5275_R3647
34.6
Plasmablast nTPM: 34.3
Samples: 4
Max nTPM: 38.7
Min nTPM: 30.1
RHH5312_R3679
38.7
RHH5220_R3592
31.4
RHH5249_R3621
30.1
RHH5278_R3650
37.2
Switched memory B-cell nTPM: 24.8
Samples: 4
Max nTPM: 35.0
Min nTPM: 19.1
RHH5311_R3678
19.1
RHH5219_R3591
19.7
RHH5248_R3620
35.0
RHH5277_R3649
25.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
162.4
Schmiedel sample id
TPM
Naive B-cell TPM: 162.4
Samples: 91
Max TPM: 309.8
Min TPM: 101.7
B_CELL_NAIVE_1
309.8
B_CELL_NAIVE_2
308.5
B_CELL_NAIVE_3
274.0
B_CELL_NAIVE_4
257.7
B_CELL_NAIVE_5
253.6
B_CELL_NAIVE_6
246.3
B_CELL_NAIVE_7
231.3
B_CELL_NAIVE_8
214.2
B_CELL_NAIVE_9
209.2
B_CELL_NAIVE_10
208.7
B_CELL_NAIVE_11
205.3
B_CELL_NAIVE_12
195.2
B_CELL_NAIVE_13
189.2
B_CELL_NAIVE_14
188.3
B_CELL_NAIVE_15
185.4
B_CELL_NAIVE_16
184.5
B_CELL_NAIVE_17
179.2
B_CELL_NAIVE_18
177.8
B_CELL_NAIVE_19
177.2
B_CELL_NAIVE_20
177.1
B_CELL_NAIVE_21
176.7
B_CELL_NAIVE_22
176.7
B_CELL_NAIVE_23
173.3
B_CELL_NAIVE_24
172.1
B_CELL_NAIVE_25
171.8
B_CELL_NAIVE_26
171.0
B_CELL_NAIVE_27
170.4
B_CELL_NAIVE_28
169.9
B_CELL_NAIVE_29
167.9
B_CELL_NAIVE_30
166.7
B_CELL_NAIVE_31
166.4
B_CELL_NAIVE_32
164.9
B_CELL_NAIVE_33
164.7
B_CELL_NAIVE_34
164.5
B_CELL_NAIVE_35
163.0
B_CELL_NAIVE_36
162.5
B_CELL_NAIVE_37
161.3
B_CELL_NAIVE_38
158.6
B_CELL_NAIVE_39
158.0
B_CELL_NAIVE_40
157.9
B_CELL_NAIVE_41
157.3
B_CELL_NAIVE_42
155.2
B_CELL_NAIVE_43
154.6
B_CELL_NAIVE_44
154.3
B_CELL_NAIVE_45
154.3
B_CELL_NAIVE_46
153.7
B_CELL_NAIVE_47
153.4
B_CELL_NAIVE_48
153.0
B_CELL_NAIVE_49
151.6
B_CELL_NAIVE_50
151.3
B_CELL_NAIVE_51
150.7
B_CELL_NAIVE_52
150.1
B_CELL_NAIVE_53
149.2
B_CELL_NAIVE_54
149.1
B_CELL_NAIVE_55
148.8
B_CELL_NAIVE_56
148.6
B_CELL_NAIVE_57
147.9
B_CELL_NAIVE_58
147.5
B_CELL_NAIVE_59
145.4
B_CELL_NAIVE_60
145.0
B_CELL_NAIVE_61
143.4
B_CELL_NAIVE_62
142.7
B_CELL_NAIVE_63
142.0
B_CELL_NAIVE_64
141.8
B_CELL_NAIVE_65
141.0
B_CELL_NAIVE_66
139.9
B_CELL_NAIVE_67
139.1
B_CELL_NAIVE_68
139.0
B_CELL_NAIVE_69
137.6
B_CELL_NAIVE_70
137.4
B_CELL_NAIVE_71
137.2
B_CELL_NAIVE_72
136.6
B_CELL_NAIVE_73
135.7
B_CELL_NAIVE_74
134.6
B_CELL_NAIVE_75
132.9
B_CELL_NAIVE_76
132.6
B_CELL_NAIVE_77
132.5
B_CELL_NAIVE_78
132.3
B_CELL_NAIVE_79
131.5
B_CELL_NAIVE_80
130.5
B_CELL_NAIVE_81
130.2
B_CELL_NAIVE_82
126.2
B_CELL_NAIVE_83
125.9
B_CELL_NAIVE_84
125.7
B_CELL_NAIVE_85
124.1
B_CELL_NAIVE_86
120.4
B_CELL_NAIVE_87
119.5
B_CELL_NAIVE_88
115.8
B_CELL_NAIVE_89
111.2
B_CELL_NAIVE_90
103.6
B_CELL_NAIVE_91
101.7
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