A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.1
nTPM
Monaco:
57.1
nTPM
Schmiedel:
164.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.1
HPA sample
nTPM
NK-cell nTPM: 10.1
Samples: 6
Max nTPM: 14.2
Min nTPM: 5.3
P10809_1013
14.2
P10809_1033
6.4
P10809_1052
9.5
P10809_1071
5.3
P10809_1093
12.1
P10809_1103
12.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.1
Monaco sample
nTPM
NK-cell nTPM: 57.1
Samples: 4
Max nTPM: 69.1
Min nTPM: 49.9
RHH5316_R3683
49.9
RHH5224_R3596
69.1
RHH5253_R3625
53.3
RHH5282_R3654
56.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
164.6
Schmiedel sample id
TPM
NK-cell TPM: 164.6
Samples: 90
Max TPM: 311.1
Min TPM: 94.8
NK_1
311.1
NK_2
266.6
NK_3
262.4
NK_4
246.3
NK_5
242.2
NK_6
237.4
NK_7
231.1
NK_8
229.1
NK_9
226.9
NK_10
226.6
NK_11
223.6
NK_12
219.7
NK_13
215.0
NK_14
213.2
NK_15
212.3
NK_16
210.9
NK_17
201.3
NK_18
201.3
NK_19
199.8
NK_20
195.5
NK_21
193.7
NK_22
193.4
NK_23
187.6
NK_24
187.2
NK_25
186.0
NK_26
185.0
NK_27
183.1
NK_28
180.1
NK_29
179.4
NK_30
177.3
NK_31
176.6
NK_32
176.4
NK_33
175.9
NK_34
175.6
NK_35
172.5
NK_36
172.2
NK_37
171.7
NK_38
166.1
NK_39
165.7
NK_40
163.7
NK_41
162.3
NK_42
161.5
NK_43
158.2
NK_44
157.3
NK_45
157.1
NK_46
155.8
NK_47
154.9
NK_48
154.4
NK_49
151.6
NK_50
151.5
NK_51
150.8
NK_52
150.6
NK_53
147.6
NK_54
147.3
NK_55
147.0
NK_56
145.7
NK_57
143.6
NK_58
141.7
NK_59
140.5
NK_60
140.4
NK_61
140.3
NK_62
139.2
NK_63
138.9
NK_64
135.9
NK_65
135.0
NK_66
134.4
NK_67
132.9
NK_68
132.7
NK_69
130.6
NK_70
128.7
NK_71
128.1
NK_72
127.0
NK_73
126.5
NK_74
126.3
NK_75
124.9
NK_76
124.5
NK_77
123.4
NK_78
119.0
NK_79
118.6
NK_80
118.3
NK_81
117.0
NK_82
115.3
NK_83
113.6
NK_84
113.4
NK_85
109.6
NK_86
109.4
NK_87
104.4
NK_88
96.4
NK_89
96.3
NK_90
94.8
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