A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.8
nTPM
Monaco:
15.9
nTPM
Schmiedel:
38.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.8
HPA sample
nTPM
Classical monocyte nTPM: 3.0
Samples: 6
Max nTPM: 3.4
Min nTPM: 2.4
P10809_1003
2.9
P10809_1020
3.4
P10809_1039
2.4
P10809_1058
3.0
P10809_1080
3.0
P10809_1107
3.2
Intermediate monocyte nTPM: 3.0
Samples: 6
Max nTPM: 3.8
Min nTPM: 2.1
P10809_1004
3.8
P10809_1023
2.9
P10809_1042
2.7
P10809_1061
3.7
P10809_1081
2.6
P10809_1108
2.1
Non-classical monocyte nTPM: 5.8
Samples: 5
Max nTPM: 15.3
Min nTPM: 2.9
P10809_1005
4.6
P10809_1053
3.1
P10809_1072
15.3
P10809_1082
3.0
P10809_1109
2.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.9
Monaco sample
nTPM
Classical monocyte nTPM: 13.5
Samples: 4
Max nTPM: 15.7
Min nTPM: 11.7
RHH5313_R3680
15.7
RHH5221_R3593
13.5
RHH5250_R3622
11.7
RHH5279_R3651
12.9
Intermediate monocyte nTPM: 12.8
Samples: 4
Max nTPM: 14.3
Min nTPM: 11.9
RHH5314_R3681
11.9
RHH5222_R3594
12.9
RHH5251_R3623
14.3
RHH5280_R3652
11.9
Non-classical monocyte nTPM: 15.9
Samples: 4
Max nTPM: 18.9
Min nTPM: 12.6
RHH5315_R3682
12.6
RHH5223_R3595
18.9
RHH5252_R3624
14.1
RHH5281_R3653
18.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.0
Schmiedel sample id
TPM
Classical monocyte TPM: 28.4
Samples: 91
Max TPM: 46.4
Min TPM: 20.4
MONOCYTES_1
46.4
MONOCYTES_2
37.6
MONOCYTES_3
35.8
MONOCYTES_4
34.7
MONOCYTES_5
34.0
MONOCYTES_6
33.8
MONOCYTES_7
33.6
MONOCYTES_8
33.5
MONOCYTES_9
33.5
MONOCYTES_10
33.1
MONOCYTES_11
33.1
MONOCYTES_12
33.0
MONOCYTES_13
32.8
MONOCYTES_14
32.7
MONOCYTES_15
32.7
MONOCYTES_16
32.4
MONOCYTES_17
32.2
MONOCYTES_18
32.2
MONOCYTES_19
32.2
MONOCYTES_20
32.1
MONOCYTES_21
31.9
MONOCYTES_22
31.8
MONOCYTES_23
31.6
MONOCYTES_24
31.6
MONOCYTES_25
31.4
MONOCYTES_26
31.4
MONOCYTES_27
31.1
MONOCYTES_28
31.1
MONOCYTES_29
30.3
MONOCYTES_30
30.3
MONOCYTES_31
30.3
MONOCYTES_32
30.0
MONOCYTES_33
29.9
MONOCYTES_34
29.6
MONOCYTES_35
29.4
MONOCYTES_36
29.4
MONOCYTES_37
29.2
MONOCYTES_38
29.0
MONOCYTES_39
29.0
MONOCYTES_40
28.9
MONOCYTES_41
28.9
MONOCYTES_42
28.9
MONOCYTES_43
28.7
MONOCYTES_44
28.6
MONOCYTES_45
28.4
MONOCYTES_46
28.4
MONOCYTES_47
28.2
MONOCYTES_48
28.1
MONOCYTES_49
28.0
MONOCYTES_50
27.8
MONOCYTES_51
27.3
MONOCYTES_52
27.2
MONOCYTES_53
27.2
MONOCYTES_54
26.9
MONOCYTES_55
26.7
MONOCYTES_56
26.6
MONOCYTES_57
26.6
MONOCYTES_58
26.5
MONOCYTES_59
26.5
MONOCYTES_60
26.5
MONOCYTES_61
26.3
MONOCYTES_62
26.2
MONOCYTES_63
26.0
MONOCYTES_64
25.9
MONOCYTES_65
25.9
MONOCYTES_66
25.9
MONOCYTES_67
25.8
MONOCYTES_68
25.7
MONOCYTES_69
25.6
MONOCYTES_70
25.4
MONOCYTES_71
24.9
MONOCYTES_72
24.6
MONOCYTES_73
24.5
MONOCYTES_74
24.5
MONOCYTES_75
24.4
MONOCYTES_76
24.2
MONOCYTES_77
24.2
MONOCYTES_78
23.9
MONOCYTES_79
23.8
MONOCYTES_80
23.3
MONOCYTES_81
23.1
MONOCYTES_82
22.8
MONOCYTES_83
22.5
MONOCYTES_84
22.4
MONOCYTES_85
22.0
MONOCYTES_86
21.8
MONOCYTES_87
21.5
MONOCYTES_88
21.0
MONOCYTES_89
20.9
MONOCYTES_90
20.6
MONOCYTES_91
20.4
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Non-classical monocyte TPM: 38.0
Samples: 90
Max TPM: 64.2
Min TPM: 22.0
M2_1
64.2
M2_2
58.9
M2_3
56.4
M2_4
54.0
M2_5
52.9
M2_6
52.4
M2_7
51.7
M2_8
51.4
M2_9
50.4
M2_10
49.4
M2_11
48.3
M2_12
48.3
M2_13
48.3
M2_14
48.1
M2_15
46.6
M2_16
45.5
M2_17
44.7
M2_18
44.4
M2_19
44.0
M2_20
43.8
M2_21
42.8
M2_22
42.7
M2_23
40.5
M2_24
40.2
M2_25
40.1
M2_26
40.0
M2_27
39.9
M2_28
39.8
M2_29
39.1
M2_30
39.0
M2_31
39.0
M2_32
38.6
M2_33
38.3
M2_34
38.3
M2_35
38.3
M2_36
37.9
M2_37
37.8
M2_38
37.8
M2_39
37.4
M2_40
37.2
M2_41
37.0
M2_42
37.0
M2_43
37.0
M2_44
36.5
M2_45
36.3
M2_46
36.2
M2_47
36.2
M2_48
35.9
M2_49
35.7
M2_50
35.4
M2_51
35.1
M2_52
35.0
M2_53
35.0
M2_54
35.0
M2_55
34.7
M2_56
34.7
M2_57
34.7
M2_58
34.5
M2_59
34.5
M2_60
34.3
M2_61
34.1
M2_62
34.1
M2_63
33.9
M2_64
33.9
M2_65
33.5
M2_66
33.2
M2_67
33.1
M2_68
32.7
M2_69
32.6
M2_70
32.5
M2_71
32.2
M2_72
32.2
M2_73
32.1
M2_74
31.9
M2_75
31.4
M2_76
31.3
M2_77
31.0
M2_78
30.2
M2_79
30.2
M2_80
30.2
M2_81
29.1
M2_82
28.8
M2_83
28.6
M2_84
28.2
M2_85
27.9
M2_86
27.8
M2_87
27.3
M2_88
27.2
M2_89
25.9
M2_90
22.0
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