BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3266.6 nTPM
HPA Brain:2059.6 nTPM
GTEx:3266.6 nTPM
FANTOM5:22.8 Scaled Tags Per Million
Macaque:1254.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 2059.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1792.8
2411 Female, age 72, unknown 2213.1
1870 Female, age 42, unknown 2005.1
2586 Male, age 75, left hemisphere 1983.1
2828 Female, age 72, unknown 1944.8
2666 Male, age 74, left hemisphere 1779.0
1830 Male, age 51, unknown 1724.3
1833 Male, age 53, unknown 1712.6
1827 Male, age 72, unknown 1699.2
2019 Male, age 18, unknown 1692.2
2219 Male, age 76, both hemispheres 1174.5
Dorsal raphe nucleus
nTPM: 1957.8
2016 Female, age 72, unknown 2261.4
2298 Female, age 72, unknown 2236.8
1828 Male, age 53, unknown 1795.7
2750 Male, age 76, both hemispheres 1783.1
2047 Male, age 72, unknown 1711.9
Inferior colliculus
nTPM: 1801.0
2097 Female, age 72, unknown 1950.0
1890 Male, age 53, unknown 1897.8
1848 Female, age 42, unknown 1803.6
2849 Male, age 72, unknown 1552.7
Median raphe nucleus
nTPM: 1570.3
2220 Male, age 76, midline 1570.3
Periaquaductal grey, anterior
nTPM: 2059.6
2502 Female, age 75, unknown 2552.4
1795 Male, age 51, unknown 1875.9
1947 Male, age 18, unknown 1750.4
Periaquaductal grey, dorsal
nTPM: 1907.3
1840 Male, age 53, unknown 2118.8
1831 Male, age 72, unknown 1989.7
2464 Female, age 72, unknown 1953.8
2850 Male, age 76, both hemispheres 1566.9
Periaquaductal grey, lateral
nTPM: 1889.8
2053 Male, age 18, unknown 2170.3
2140 Male, age 76, both hemispheres 1789.4
2272 Male, age 74, both hemispheres 1709.7
Pretectal area
nTPM: 1646.0
2316 Male, age 76, right hemisphere 1967.1
2825 Male, age 18, unknown 1894.8
2407 Male, age 75, both hemispheres 1880.6
2224 Female, age 72, unknown 1875.5
2273 Male, age 74, both hemispheres 1721.8
1815 Male, age 53, unknown 1650.1
2667 Female, age 75, unknown 1570.9
2007 Male, age 72, unknown 1473.3
1817 Female, age 42, unknown 1441.7
1816 Male, age 51, unknown 1352.7
1944 Female, age 72, unknown 1277.1
Red nucleus
nTPM: 2014.7
2503 Female, age 72, unknown 2662.4
1865 Male, age 51, unknown 2254.4
2227 Male, age 72, unknown 2195.3
2769 Male, age 72, unknown 2188.1
1821 Female, age 72, unknown 2127.3
1904 Male, age 53, unknown 2080.2
2584 Male, age 75, left hemisphere 1940.2
2785 Male, age 18, unknown 1816.2
1954 Female, age 42, unknown 1774.1
2588 Male, age 74, left hemisphere 1766.8
2823 Male, age 76, right hemisphere 1696.7
2725 Female, age 75, unknown 1675.2
Substantia nigra
nTPM: 1820.6
1851 Male, age 51, unknown 2183.5
2590 Female, age 75, unknown 2086.9
2665 Male, age 74, both hemispheres 2081.3
2699 Male, age 18, unknown 1971.1
2409 Female, age 72, unknown 1802.1
2583 Male, age 75, right hemisphere 1788.1
2241 Male, age 72, unknown 1767.5
1916 Female, age 42, unknown 1621.2
1941 Male, age 53, unknown 1473.6
1889 Female, age 72, unknown 1430.3
Superior colliculus
nTPM: 1868.2
2587 Male, age 74, left hemisphere 2266.4
1995 Male, age 72, unknown 2248.8
2664 Male, age 75, both hemispheres 2240.6
1913 Female, age 42, unknown 2055.7
1839 Male, age 51, unknown 1850.3
1796 Male, age 53, unknown 1804.1
2261 Male, age 18, unknown 1677.3
2668 Female, age 75, unknown 1567.5
2087 Female, age 72, unknown 1537.2
1895 Male, age 76, right hemisphere 1434.2
Ventral tegmental area
nTPM: 1973.2
2021 Male, age 53, unknown 2202.4
2410 Female, age 72, unknown 2160.1
2223 Female, age 72, unknown 2019.1
1915 Female, age 42, unknown 1944.2
1942 Male, age 51, unknown 1916.6
2218 Male, age 76, both hemispheres 1596.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3266.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3266.6
Samples: 183

Max nTPM: 5938.5
Min nTPM: 1170.4
Std nTPM: 968.0
Median nTPM: 3193.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 5938.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 5755.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 5707.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 5487.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 5455.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 5433.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 5200.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 5161.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 4913.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 4870.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 4827.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.8
FF:10158-103A5 76 years, female 22.8

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 1254.9
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 1254.9
Samples: 1

Max nTPM: 1254.9
Min nTPM: 1254.9
Sample A 1254.9
Midbrain
nTPM: 1185.1
Samples: 1

Max nTPM: 1185.1
Min nTPM: 1185.1
Sample A 1185.1
Superior colliculi
nTPM: 856.4
Samples: 1

Max nTPM: 856.4
Min nTPM: 856.4
Sample A 856.4

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