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  • FMNL2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:66.7 nTPM
HPA Brain:145.4 nTPM
GTEx:66.7 nTPM
FANTOM5:210.2 Scaled Tags Per Million
Pig:61.9 nTPM
Mouse:20.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

145.4
Sample id Sample description nTPM
Amygdala
nTPM: 145.4
2695 Female, age 67, right hemisphere 166.7
2814 Male, age 76, right hemisphere 159.1
2514 Male, age 75, right hemisphere 155.4
2517 Female, age 94, left hemisphere 130.0
1987 Female, age 91, left hemisphere 115.7
Basal amygdala
nTPM: 122.0
2609 Male, age 75, right hemisphere 140.0
2110 Male, age 80, left hemisphere 127.5
2685 Female, age 94, left hemisphere 123.8
2827 Female, age 67, right hemisphere 120.6
1955 Male, age 76, both hemispheres 117.7
2243 Female, age 91, right hemisphere 102.6
Central amygdala
nTPM: 125.0
2826 Female, age 94, left hemisphere 142.4
1905 Male, age 76, both hemispheres 137.4
2515 Male, age 75, right hemisphere 120.1
2701 Female, age 91, right hemisphere 117.6
2239 Male, age 80, left hemisphere 107.4
Corticomedial amygdala
nTPM: 115.3
2428 Male, age 75, right hemisphere 134.4
2429 Female, age 94, left hemisphere 121.0
2829 Male, age 80, left hemisphere 114.8
2240 Male, age 76, both hemispheres 112.5
2535 Female, age 67, right hemisphere 105.9
2242 Female, age 91, right hemisphere 103.5
Lateral amygdala
nTPM: 134.6
2516 Male, age 75, right hemisphere 161.4
1883 Male, age 76, both hemispheres 156.3
2830 Female, age 67, right hemisphere 138.1
2534 Female, age 94, left hemisphere 123.4
2256 Male, age 80, left hemisphere 121.0
2255 Female, age 91, right hemisphere 107.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 66.7
Samples: 181

Max nTPM: 119.4
Min nTPM: 25.1
Std nTPM: 19.1
Median nTPM: 66.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 119.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 119.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 115.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 115.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 108.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 107.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 107.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 107.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 106.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 104.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 104.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 102.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 98.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 98.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 97.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 97.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 96.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 96.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 93.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 93.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 92.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 91.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 89.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 88.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 88.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 88.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 88.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 88.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 87.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 86.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 85.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 84.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 84.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 84.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 83.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 83.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 83.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 81.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 78.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 78.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 76.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 76.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 76.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 76.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 75.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 75.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 75.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 75.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 74.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 74.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 74.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 74.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 74.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 74.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 73.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 73.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 73.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 72.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 72.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 72.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 71.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 70.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 70.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 70.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 70.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 69.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 69.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 69.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 69.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 69.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 69.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 69.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 68.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 68.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 68.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 68.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 68.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 68.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 68.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 68.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 67.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 67.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 67.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 67.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 67.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 67.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 67.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 67.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 67.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 66.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 66.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 65.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 65.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 65.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 64.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 63.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 63.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 63.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 62.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 62.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 62.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 62.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 62.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 61.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 60.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 60.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 60.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 60.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 60.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 60.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 59.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 59.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 59.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 58.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 58.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 58.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 58.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 58.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 57.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 57.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 56.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 56.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 56.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 56.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 56.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 56.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 56.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 55.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 55.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 54.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 54.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 53.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 53.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 53.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 52.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 52.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 52.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 51.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 51.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 51.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 51.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 51.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 51.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 50.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 50.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 50.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 50.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 49.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 49.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 48.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 48.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 48.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 48.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 48.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 47.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 46.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 46.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 45.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 44.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 44.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 44.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 43.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 43.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 43.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 42.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 42.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 41.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 41.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 41.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 40.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 40.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 40.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 39.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 38.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 37.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 36.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 36.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 35.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 34.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 27.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 25.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

210.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 210.2
FF:10151-102I7 76 years, female 210.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.9
Pig sample Sample description nTPM
Amygdala
nTPM: 61.9
Samples: 4

Max nTPM: 73.4
Min nTPM: 58.0
Sample A Female 58.3
Sample B Female 73.4
Sample C Male 58.0
Sample D Male 58.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 20.8
Samples: 4

Max nTPM: 22.0
Min nTPM: 19.9
Sample A Male 19.9
Sample B Male 20.1
Sample C Female 21.1
Sample D Female 22.0

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