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  • FMNL2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:214.1 nTPM
HPA Brain:215.2 nTPM
GTEx:214.1 nTPM
FANTOM5:403.2 Scaled Tags Per Million
Pig:285.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

215.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 194.3
2816 Male, age 47, midline 221.7
2048 Male, age 55, midline 213.6
1981 Female, age 72, midline 211.6
2194 Female, age 79, both hemispheres 185.9
2565 Male, age 75, midline 138.5
Cervical spinal cord, dorsal horn
nTPM: 213.0
2296 Male, age 66, both hemispheres 375.1
2173 Female, age 72, unknown 295.3
2069 Male, age 47, both hemispheres 191.6
1877 Male, age 55, unknown 177.2
2721 Male, age 90, both hemispheres 122.1
2297 Male, age 75, both hemispheres 116.8
Cervical spinal cord, ventral horn
nTPM: 215.2
2098 Female, age 72, unknown 248.1
2820 Female, age 79, both hemispheres 230.1
2068 Male, age 55, unknown 227.9
2480 Male, age 75, both hemispheres 202.5
2295 Male, age 66, both hemispheres 192.0
2809 Male, age 90, both hemispheres 190.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 214.1
Samples: 204

Max nTPM: 380.5
Min nTPM: 60.8
Std nTPM: 69.4
Median nTPM: 208.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 380.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 379.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 374.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 370.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 368.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 364.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 358.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 349.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 347.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 346.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 345.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 345.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 340.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 337.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 332.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 329.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 319.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 309.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 307.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 306.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 306.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 300.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 299.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 299.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 294.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 294.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 292.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 292.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 285.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 284.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 284.2
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 280.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 280.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 280.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 277.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 276.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 275.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 274.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 273.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 272.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 271.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 265.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 265.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 264.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 262.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 262.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 260.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 260.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 260.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 260.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 259.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 259.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 258.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 257.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 257.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 257.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 256.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 256.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 256.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 255.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 254.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 254.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 253.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 253.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 253.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 252.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 250.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 249.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 242.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 241.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 240.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 240.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 238.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 238.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 237.6
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 237.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 237.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 233.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 233.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 230.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 229.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 228.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 225.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 224.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 224.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 221.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 220.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 220.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 219.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 218.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 217.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 217.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 216.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 216.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 213.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 213.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 212.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 212.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 210.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 209.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 209.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 209.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 208.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 208.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 207.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 207.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 207.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 207.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 205.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 205.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 203.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 202.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 199.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 199.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 198.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 198.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 197.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 197.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 194.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 193.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 193.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 192.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 192.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 190.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 190.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 190.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 190.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 188.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 188.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 187.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 186.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 184.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 183.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 183.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 182.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 181.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 181.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 181.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 181.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 181.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 180.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 180.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 177.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 177.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 176.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 174.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 173.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 171.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 171.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 170.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 170.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 168.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 167.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 166.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 166.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 164.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 163.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 162.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 161.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 160.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 159.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 155.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 155.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 154.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 152.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 151.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 148.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 146.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 146.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 145.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 144.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 144.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 138.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 138.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 137.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 135.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 135.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 135.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 134.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 133.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 131.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 129.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 127.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 127.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 125.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 123.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 121.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 120.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 116.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 116.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 114.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 113.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 102.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 100.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 96.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 96.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 94.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 93.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 90.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 81.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 73.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 70.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 67.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 60.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

403.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 403.2
FF:10181-103D1 60 years, female 428.4
FF:10159-103A6 76 years, female 377.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

285.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 239.3
Samples: 4

Max nTPM: 255.1
Min nTPM: 221.6
Sample A Female 230.3
Sample B Female 255.1
Sample C Male 221.6
Sample D Male 250.2
Ventral spinal cord
nTPM: 285.7
Samples: 4

Max nTPM: 374.9
Min nTPM: 223.3
Sample A Female 292.5
Sample B Female 251.9
Sample C Male 223.3
Sample D Male 374.9

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