MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:109.3 nTPM
HPA Brain:244.3 nTPM
GTEx:109.3 nTPM
FANTOM5:512.1 Scaled Tags Per Million
Pig:191.1 nTPM
Mouse:23.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 244.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 200.0
1870 Female, age 42, unknown 249.9
1830 Male, age 51, unknown 243.0
2411 Female, age 72, unknown 235.1
1833 Male, age 53, unknown 227.2
2019 Male, age 18, unknown 220.5
2828 Female, age 72, unknown 184.1
2666 Male, age 74, left hemisphere 167.8
2586 Male, age 75, left hemisphere 162.4
2219 Male, age 76, both hemispheres 159.5
1827 Male, age 72, unknown 150.3
Dorsal raphe nucleus
nTPM: 165.1
2750 Male, age 76, both hemispheres 257.8
1828 Male, age 53, unknown 169.7
2016 Female, age 72, unknown 169.6
2047 Male, age 72, unknown 122.4
2298 Female, age 72, unknown 106.0
Inferior colliculus
nTPM: 149.0
1890 Male, age 53, unknown 162.9
1848 Female, age 42, unknown 156.7
2849 Male, age 72, unknown 142.5
2097 Female, age 72, unknown 133.9
Median raphe nucleus
nTPM: 158.8
2220 Male, age 76, midline 158.8
Periaquaductal grey, anterior
nTPM: 133.0
2502 Female, age 75, unknown 146.4
1947 Male, age 18, unknown 133.8
1795 Male, age 51, unknown 118.6
Periaquaductal grey, dorsal
nTPM: 127.1
2464 Female, age 72, unknown 167.3
1831 Male, age 72, unknown 134.3
2850 Male, age 76, both hemispheres 108.4
1840 Male, age 53, unknown 98.5
Periaquaductal grey, lateral
nTPM: 131.2
2053 Male, age 18, unknown 148.5
2272 Male, age 74, both hemispheres 128.8
2140 Male, age 76, both hemispheres 116.4
Pretectal area
nTPM: 142.7
1815 Male, age 53, unknown 175.1
2316 Male, age 76, right hemisphere 174.5
2667 Female, age 75, unknown 169.6
2825 Male, age 18, unknown 148.1
2407 Male, age 75, both hemispheres 144.8
1817 Female, age 42, unknown 142.2
2007 Male, age 72, unknown 135.0
2224 Female, age 72, unknown 134.8
2273 Male, age 74, both hemispheres 128.4
1944 Female, age 72, unknown 113.6
1816 Male, age 51, unknown 104.1
Red nucleus
nTPM: 244.3
1865 Male, age 51, unknown 297.5
1904 Male, age 53, unknown 282.5
2769 Male, age 72, unknown 272.7
2227 Male, age 72, unknown 270.5
1821 Female, age 72, unknown 270.1
2823 Male, age 76, right hemisphere 259.6
2503 Female, age 72, unknown 253.0
1954 Female, age 42, unknown 243.2
2785 Male, age 18, unknown 230.4
2588 Male, age 74, left hemisphere 212.4
2584 Male, age 75, left hemisphere 180.8
2725 Female, age 75, unknown 159.3
Substantia nigra
nTPM: 166.2
2409 Female, age 72, unknown 200.7
2583 Male, age 75, right hemisphere 192.6
2699 Male, age 18, unknown 180.4
1851 Male, age 51, unknown 175.9
2590 Female, age 75, unknown 168.9
1889 Female, age 72, unknown 166.5
2241 Male, age 72, unknown 160.3
1941 Male, age 53, unknown 147.7
1916 Female, age 42, unknown 136.7
2665 Male, age 74, both hemispheres 132.0
Superior colliculus
nTPM: 171.6
1913 Female, age 42, unknown 274.5
1995 Male, age 72, unknown 226.2
1895 Male, age 76, right hemisphere 186.0
2668 Female, age 75, unknown 183.6
2587 Male, age 74, left hemisphere 176.3
1839 Male, age 51, unknown 166.4
1796 Male, age 53, unknown 132.8
2664 Male, age 75, both hemispheres 129.2
2087 Female, age 72, unknown 124.2
2261 Male, age 18, unknown 116.7
Ventral tegmental area
nTPM: 183.1
2223 Female, age 72, unknown 268.0
2410 Female, age 72, unknown 204.0
1942 Male, age 51, unknown 164.8
2218 Male, age 76, both hemispheres 160.5
2021 Male, age 53, unknown 157.6
1915 Female, age 42, unknown 143.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 109.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.3
Samples: 183

Max nTPM: 322.6
Min nTPM: 36.7
Std nTPM: 47.6
Median nTPM: 101.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 322.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 305.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 284.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 248.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 241.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 228.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 201.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 192.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 190.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 189.1
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 189.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 512.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 512.1
FF:10158-103A5 76 years, female 512.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 191.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 145.1
Samples: 4

Max nTPM: 233.7
Min nTPM: 91.1
Sample A Female 138.4
Sample B Female 91.1
Sample C Male 117.1
Sample D Male 233.7
Midbrain
nTPM: 191.1
Samples: 4

Max nTPM: 455.4
Min nTPM: 82.1
Sample A Female 455.4
Sample B Female 137.0
Sample C Male 90.0
Sample D Male 82.1
Periaqueductal gray
nTPM: 92.7
Samples: 3

Max nTPM: 111.4
Min nTPM: 69.6
Sample B Female 111.4
Sample C Male 69.6
Sample D Male 97.1
Superior colliculi
nTPM: 124.3
Samples: 4

Max nTPM: 145.4
Min nTPM: 91.2
Sample A Female 129.8
Sample B Female 91.2
Sample C Male 130.9
Sample D Male 145.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 25.8
Min nTPM: 22.3
Sample A Male 22.3
Sample B Male 22.6
Sample C Female 25.8
Sample D Female 24.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo