A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
169.7
nTPM
Monaco:
250.9
nTPM
Schmiedel:
53.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
169.7
HPA sample
nTPM
Memory B-cell nTPM: 169.7
Samples: 6
Max nTPM: 248.1
Min nTPM: 113.9
P10809_1017
113.9
P10809_1025
207.0
P10809_1044
248.1
P10809_1063
118.4
P10809_1092
185.7
P10809_1105
145.0
Naive B-cell nTPM: 152.5
Samples: 6
Max nTPM: 294.8
Min nTPM: 70.7
P10809_1011
70.7
P10809_1029
144.1
P10809_1048
294.8
P10809_1067
101.3
P10809_1091
138.6
P10809_1104
165.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
250.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 191.7
Samples: 4
Max nTPM: 263.5
Min nTPM: 112.1
RHH5310_R3677
232.6
RHH5218_R3590
158.5
RHH5247_R3619
263.5
RHH5276_R3648
112.1
Naive B-cell nTPM: 113.6
Samples: 4
Max nTPM: 137.1
Min nTPM: 90.4
RHH5308_R3675
125.1
RHH5216_R3588
137.1
RHH5245_R3617
90.4
RHH5274_R3646
101.9
Non-switched memory B-cell nTPM: 138.0
Samples: 4
Max nTPM: 170.3
Min nTPM: 105.1
RHH5309_R3676
147.0
RHH5217_R3589
129.5
RHH5246_R3618
170.3
RHH5275_R3647
105.1
Plasmablast nTPM: 250.9
Samples: 4
Max nTPM: 312.1
Min nTPM: 223.5
RHH5312_R3679
232.7
RHH5220_R3592
312.1
RHH5249_R3621
235.4
RHH5278_R3650
223.5
Switched memory B-cell nTPM: 134.4
Samples: 4
Max nTPM: 203.7
Min nTPM: 96.4
RHH5311_R3678
119.8
RHH5219_R3591
203.7
RHH5248_R3620
117.7
RHH5277_R3649
96.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.5
Schmiedel sample id
TPM
Naive B-cell TPM: 53.5
Samples: 91
Max TPM: 68.5
Min TPM: 28.1
B_CELL_NAIVE_1
68.5
B_CELL_NAIVE_2
66.0
B_CELL_NAIVE_3
63.3
B_CELL_NAIVE_4
63.1
B_CELL_NAIVE_5
62.4
B_CELL_NAIVE_6
62.4
B_CELL_NAIVE_7
62.0
B_CELL_NAIVE_8
61.1
B_CELL_NAIVE_9
60.9
B_CELL_NAIVE_10
60.2
B_CELL_NAIVE_11
59.4
B_CELL_NAIVE_12
59.3
B_CELL_NAIVE_13
59.1
B_CELL_NAIVE_14
59.1
B_CELL_NAIVE_15
58.8
B_CELL_NAIVE_16
58.7
B_CELL_NAIVE_17
58.6
B_CELL_NAIVE_18
58.6
B_CELL_NAIVE_19
58.4
B_CELL_NAIVE_20
58.4
B_CELL_NAIVE_21
58.3
B_CELL_NAIVE_22
58.3
B_CELL_NAIVE_23
58.0
B_CELL_NAIVE_24
57.9
B_CELL_NAIVE_25
57.9
B_CELL_NAIVE_26
57.4
B_CELL_NAIVE_27
56.7
B_CELL_NAIVE_28
56.6
B_CELL_NAIVE_29
56.6
B_CELL_NAIVE_30
56.5
B_CELL_NAIVE_31
56.5
B_CELL_NAIVE_32
56.3
B_CELL_NAIVE_33
56.2
B_CELL_NAIVE_34
56.0
B_CELL_NAIVE_35
56.0
B_CELL_NAIVE_36
55.5
B_CELL_NAIVE_37
55.5
B_CELL_NAIVE_38
55.4
B_CELL_NAIVE_39
55.4
B_CELL_NAIVE_40
55.2
B_CELL_NAIVE_41
55.2
B_CELL_NAIVE_42
55.1
B_CELL_NAIVE_43
55.1
B_CELL_NAIVE_44
55.0
B_CELL_NAIVE_45
55.0
B_CELL_NAIVE_46
54.9
B_CELL_NAIVE_47
54.8
B_CELL_NAIVE_48
54.8
B_CELL_NAIVE_49
54.8
B_CELL_NAIVE_50
54.6
B_CELL_NAIVE_51
54.2
B_CELL_NAIVE_52
54.1
B_CELL_NAIVE_53
53.8
B_CELL_NAIVE_54
53.5
B_CELL_NAIVE_55
53.5
B_CELL_NAIVE_56
53.4
B_CELL_NAIVE_57
53.2
B_CELL_NAIVE_58
53.2
B_CELL_NAIVE_59
52.9
B_CELL_NAIVE_60
52.9
B_CELL_NAIVE_61
52.3
B_CELL_NAIVE_62
52.0
B_CELL_NAIVE_63
51.9
B_CELL_NAIVE_64
51.9
B_CELL_NAIVE_65
51.3
B_CELL_NAIVE_66
50.9
B_CELL_NAIVE_67
50.8
B_CELL_NAIVE_68
50.5
B_CELL_NAIVE_69
50.3
B_CELL_NAIVE_70
50.2
B_CELL_NAIVE_71
50.1
B_CELL_NAIVE_72
49.9
B_CELL_NAIVE_73
49.8
B_CELL_NAIVE_74
48.6
B_CELL_NAIVE_75
48.2
B_CELL_NAIVE_76
47.9
B_CELL_NAIVE_77
47.4
B_CELL_NAIVE_78
47.2
B_CELL_NAIVE_79
45.9
B_CELL_NAIVE_80
45.5
B_CELL_NAIVE_81
44.3
B_CELL_NAIVE_82
42.9
B_CELL_NAIVE_83
42.4
B_CELL_NAIVE_84
42.4
B_CELL_NAIVE_85
42.3
B_CELL_NAIVE_86
41.4
B_CELL_NAIVE_87
40.5
B_CELL_NAIVE_88
39.3
B_CELL_NAIVE_89
37.8
B_CELL_NAIVE_90
37.7
B_CELL_NAIVE_91
28.1
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The Human Protein Atlas project is funded
