A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
277.5
nTPM
Monaco:
208.8
nTPM
Schmiedel:
60.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
277.5
HPA sample
nTPM
Classical monocyte nTPM: 236.4
Samples: 6
Max nTPM: 320.6
Min nTPM: 173.4
P10809_1003
173.4
P10809_1020
255.6
P10809_1039
320.6
P10809_1058
181.8
P10809_1080
222.6
P10809_1107
264.1
Intermediate monocyte nTPM: 268.9
Samples: 6
Max nTPM: 334.3
Min nTPM: 197.0
P10809_1004
205.0
P10809_1023
329.0
P10809_1042
323.1
P10809_1061
197.0
P10809_1081
224.8
P10809_1108
334.3
Non-classical monocyte nTPM: 277.5
Samples: 5
Max nTPM: 338.0
Min nTPM: 194.9
P10809_1005
194.9
P10809_1053
296.8
P10809_1072
312.6
P10809_1082
245.4
P10809_1109
338.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
208.8
Monaco sample
nTPM
Classical monocyte nTPM: 187.1
Samples: 4
Max nTPM: 228.7
Min nTPM: 148.6
RHH5313_R3680
185.2
RHH5221_R3593
148.6
RHH5250_R3622
228.7
RHH5279_R3651
185.9
Intermediate monocyte nTPM: 208.8
Samples: 4
Max nTPM: 268.8
Min nTPM: 164.0
RHH5314_R3681
220.6
RHH5222_R3594
181.9
RHH5251_R3623
164.0
RHH5280_R3652
268.8
Non-classical monocyte nTPM: 177.0
Samples: 4
Max nTPM: 191.6
Min nTPM: 160.2
RHH5315_R3682
191.6
RHH5223_R3595
160.2
RHH5252_R3624
183.0
RHH5281_R3653
173.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.4
Schmiedel sample id
TPM
Classical monocyte TPM: 48.6
Samples: 91
Max TPM: 61.1
Min TPM: 38.0
MONOCYTES_1
61.1
MONOCYTES_2
57.5
MONOCYTES_3
56.7
MONOCYTES_4
56.2
MONOCYTES_5
56.0
MONOCYTES_6
55.4
MONOCYTES_7
54.1
MONOCYTES_8
53.9
MONOCYTES_9
53.8
MONOCYTES_10
53.5
MONOCYTES_11
53.4
MONOCYTES_12
53.4
MONOCYTES_13
53.2
MONOCYTES_14
53.2
MONOCYTES_15
53.1
MONOCYTES_16
52.8
MONOCYTES_17
52.8
MONOCYTES_18
52.5
MONOCYTES_19
52.5
MONOCYTES_20
52.2
MONOCYTES_21
52.2
MONOCYTES_22
52.2
MONOCYTES_23
52.0
MONOCYTES_24
51.9
MONOCYTES_25
51.8
MONOCYTES_26
51.7
MONOCYTES_27
51.7
MONOCYTES_28
51.6
MONOCYTES_29
51.3
MONOCYTES_30
51.2
MONOCYTES_31
51.0
MONOCYTES_32
50.5
MONOCYTES_33
50.5
MONOCYTES_34
50.3
MONOCYTES_35
49.9
MONOCYTES_36
49.7
MONOCYTES_37
49.5
MONOCYTES_38
49.5
MONOCYTES_39
49.5
MONOCYTES_40
49.1
MONOCYTES_41
49.1
MONOCYTES_42
49.1
MONOCYTES_43
49.0
MONOCYTES_44
49.0
MONOCYTES_45
48.9
MONOCYTES_46
48.9
MONOCYTES_47
48.7
MONOCYTES_48
48.6
MONOCYTES_49
48.5
MONOCYTES_50
48.5
MONOCYTES_51
48.3
MONOCYTES_52
48.2
MONOCYTES_53
48.0
MONOCYTES_54
47.8
MONOCYTES_55
47.6
MONOCYTES_56
47.4
MONOCYTES_57
47.4
MONOCYTES_58
47.3
MONOCYTES_59
47.2
MONOCYTES_60
47.0
MONOCYTES_61
47.0
MONOCYTES_62
46.9
MONOCYTES_63
46.9
MONOCYTES_64
46.8
MONOCYTES_65
46.7
MONOCYTES_66
46.2
MONOCYTES_67
46.0
MONOCYTES_68
46.0
MONOCYTES_69
46.0
MONOCYTES_70
45.8
MONOCYTES_71
45.3
MONOCYTES_72
45.2
MONOCYTES_73
44.9
MONOCYTES_74
44.7
MONOCYTES_75
44.3
MONOCYTES_76
44.2
MONOCYTES_77
44.1
MONOCYTES_78
43.4
MONOCYTES_79
43.3
MONOCYTES_80
43.1
MONOCYTES_81
42.7
MONOCYTES_82
42.7
MONOCYTES_83
41.9
MONOCYTES_84
41.8
MONOCYTES_85
41.7
MONOCYTES_86
41.6
MONOCYTES_87
40.6
MONOCYTES_88
40.1
MONOCYTES_89
39.4
MONOCYTES_90
39.3
MONOCYTES_91
38.0
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Non-classical monocyte TPM: 60.4
Samples: 90
Max TPM: 68.6
Min TPM: 47.5
M2_1
68.6
M2_2
67.9
M2_3
67.8
M2_4
67.7
M2_5
67.5
M2_6
67.0
M2_7
67.0
M2_8
66.8
M2_9
66.8
M2_10
66.7
M2_11
66.6
M2_12
66.2
M2_13
66.0
M2_14
65.6
M2_15
64.9
M2_16
64.9
M2_17
64.1
M2_18
63.8
M2_19
63.7
M2_20
63.7
M2_21
63.5
M2_22
63.4
M2_23
63.2
M2_24
63.2
M2_25
63.2
M2_26
63.0
M2_27
63.0
M2_28
62.9
M2_29
62.9
M2_30
62.8
M2_31
62.6
M2_32
62.3
M2_33
61.9
M2_34
61.8
M2_35
61.8
M2_36
61.7
M2_37
61.7
M2_38
61.4
M2_39
61.3
M2_40
61.3
M2_41
61.3
M2_42
61.2
M2_43
61.2
M2_44
61.2
M2_45
61.1
M2_46
61.0
M2_47
60.9
M2_48
60.8
M2_49
60.5
M2_50
60.5
M2_51
60.4
M2_52
60.3
M2_53
60.3
M2_54
60.2
M2_55
60.0
M2_56
59.9
M2_57
59.8
M2_58
59.8
M2_59
59.5
M2_60
59.5
M2_61
59.5
M2_62
59.2
M2_63
59.1
M2_64
58.9
M2_65
58.8
M2_66
58.6
M2_67
58.6
M2_68
58.2
M2_69
58.0
M2_70
57.8
M2_71
57.4
M2_72
56.6
M2_73
56.3
M2_74
56.1
M2_75
55.9
M2_76
55.8
M2_77
55.7
M2_78
55.7
M2_79
55.0
M2_80
54.4
M2_81
53.9
M2_82
53.1
M2_83
51.3
M2_84
51.3
M2_85
51.3
M2_86
51.0
M2_87
50.5
M2_88
50.0
M2_89
48.7
M2_90
47.5
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