A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
165.2
nTPM
Monaco:
166.4
nTPM
Schmiedel:
75.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
165.2
HPA sample
nTPM
NK-cell nTPM: 165.2
Samples: 6
Max nTPM: 229.9
Min nTPM: 82.7
P10809_1013
82.7
P10809_1033
229.9
P10809_1052
141.6
P10809_1071
216.9
P10809_1093
95.7
P10809_1103
224.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
166.4
Monaco sample
nTPM
NK-cell nTPM: 166.4
Samples: 4
Max nTPM: 207.2
Min nTPM: 136.5
RHH5316_R3683
183.7
RHH5224_R3596
207.2
RHH5253_R3625
136.5
RHH5282_R3654
138.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.5
Schmiedel sample id
TPM
NK-cell TPM: 75.5
Samples: 90
Max TPM: 90.8
Min TPM: 57.5
NK_1
90.8
NK_2
88.7
NK_3
88.5
NK_4
88.4
NK_5
86.7
NK_6
86.6
NK_7
86.5
NK_8
85.9
NK_9
85.8
NK_10
85.7
NK_11
85.2
NK_12
85.1
NK_13
84.0
NK_14
83.9
NK_15
83.5
NK_16
83.4
NK_17
83.0
NK_18
81.5
NK_19
81.5
NK_20
81.4
NK_21
81.1
NK_22
81.0
NK_23
80.9
NK_24
80.6
NK_25
80.5
NK_26
80.3
NK_27
80.2
NK_28
80.1
NK_29
80.0
NK_30
79.6
NK_31
79.4
NK_32
79.4
NK_33
78.9
NK_34
78.8
NK_35
78.8
NK_36
78.6
NK_37
78.6
NK_38
78.6
NK_39
78.0
NK_40
77.9
NK_41
77.8
NK_42
77.1
NK_43
76.7
NK_44
76.3
NK_45
76.3
NK_46
75.9
NK_47
75.4
NK_48
75.4
NK_49
75.4
NK_50
74.9
NK_51
74.7
NK_52
74.5
NK_53
74.3
NK_54
73.8
NK_55
73.8
NK_56
73.7
NK_57
72.9
NK_58
72.9
NK_59
72.9
NK_60
72.8
NK_61
72.7
NK_62
72.4
NK_63
71.9
NK_64
71.2
NK_65
71.1
NK_66
70.8
NK_67
70.5
NK_68
69.9
NK_69
69.4
NK_70
68.9
NK_71
68.7
NK_72
68.7
NK_73
68.6
NK_74
68.3
NK_75
67.8
NK_76
67.2
NK_77
67.2
NK_78
67.0
NK_79
66.2
NK_80
65.5
NK_81
64.3
NK_82
63.3
NK_83
63.1
NK_84
62.4
NK_85
62.3
NK_86
61.8
NK_87
61.8
NK_88
60.8
NK_89
58.1
NK_90
57.5
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