A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.2
nTPM
Monaco:
61.0
nTPM
Schmiedel:
13.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.2
HPA sample
nTPM
Memory B-cell nTPM: 4.2
Samples: 6
Max nTPM: 8.5
Min nTPM: 0.3
P10809_1017
4.7
P10809_1025
8.5
P10809_1044
5.0
P10809_1063
0.3
P10809_1092
2.8
P10809_1105
3.8
Naive B-cell nTPM: 3.9
Samples: 6
Max nTPM: 8.3
Min nTPM: 1.5
P10809_1011
3.8
P10809_1029
4.4
P10809_1048
8.3
P10809_1067
1.9
P10809_1091
1.5
P10809_1104
3.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 35.0
Samples: 4
Max nTPM: 47.0
Min nTPM: 20.5
RHH5310_R3677
40.8
RHH5218_R3590
47.0
RHH5247_R3619
20.5
RHH5276_R3648
31.5
Naive B-cell nTPM: 35.0
Samples: 4
Max nTPM: 50.1
Min nTPM: 18.6
RHH5308_R3675
50.1
RHH5216_R3588
18.6
RHH5245_R3617
39.0
RHH5274_R3646
32.1
Non-switched memory B-cell nTPM: 39.7
Samples: 4
Max nTPM: 51.0
Min nTPM: 30.8
RHH5309_R3676
35.6
RHH5217_R3589
30.8
RHH5246_R3618
41.3
RHH5275_R3647
51.0
Plasmablast nTPM: 61.0
Samples: 4
Max nTPM: 62.8
Min nTPM: 57.5
RHH5312_R3679
57.5
RHH5220_R3592
61.4
RHH5249_R3621
62.8
RHH5278_R3650
62.2
Switched memory B-cell nTPM: 44.2
Samples: 4
Max nTPM: 56.2
Min nTPM: 28.5
RHH5311_R3678
48.1
RHH5219_R3591
56.2
RHH5248_R3620
28.5
RHH5277_R3649
43.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.4
Schmiedel sample id
TPM
Naive B-cell TPM: 13.4
Samples: 91
Max TPM: 28.3
Min TPM: 3.7
B_CELL_NAIVE_1
28.3
B_CELL_NAIVE_2
25.4
B_CELL_NAIVE_3
23.7
B_CELL_NAIVE_4
23.0
B_CELL_NAIVE_5
22.7
B_CELL_NAIVE_6
22.7
B_CELL_NAIVE_7
21.6
B_CELL_NAIVE_8
21.2
B_CELL_NAIVE_9
20.3
B_CELL_NAIVE_10
20.2
B_CELL_NAIVE_11
19.9
B_CELL_NAIVE_12
19.9
B_CELL_NAIVE_13
19.7
B_CELL_NAIVE_14
19.4
B_CELL_NAIVE_15
18.7
B_CELL_NAIVE_16
18.2
B_CELL_NAIVE_17
18.1
B_CELL_NAIVE_18
17.7
B_CELL_NAIVE_19
17.5
B_CELL_NAIVE_20
17.0
B_CELL_NAIVE_21
16.9
B_CELL_NAIVE_22
16.7
B_CELL_NAIVE_23
16.6
B_CELL_NAIVE_24
16.5
B_CELL_NAIVE_25
16.5
B_CELL_NAIVE_26
16.4
B_CELL_NAIVE_27
16.3
B_CELL_NAIVE_28
16.2
B_CELL_NAIVE_29
16.1
B_CELL_NAIVE_30
16.1
B_CELL_NAIVE_31
15.8
B_CELL_NAIVE_32
15.5
B_CELL_NAIVE_33
15.3
B_CELL_NAIVE_34
14.7
B_CELL_NAIVE_35
14.6
B_CELL_NAIVE_36
14.4
B_CELL_NAIVE_37
14.2
B_CELL_NAIVE_38
13.9
B_CELL_NAIVE_39
13.9
B_CELL_NAIVE_40
13.6
B_CELL_NAIVE_41
13.6
B_CELL_NAIVE_42
13.5
B_CELL_NAIVE_43
13.3
B_CELL_NAIVE_44
13.2
B_CELL_NAIVE_45
13.2
B_CELL_NAIVE_46
12.8
B_CELL_NAIVE_47
12.8
B_CELL_NAIVE_48
12.8
B_CELL_NAIVE_49
12.5
B_CELL_NAIVE_50
12.5
B_CELL_NAIVE_51
12.4
B_CELL_NAIVE_52
12.0
B_CELL_NAIVE_53
12.0
B_CELL_NAIVE_54
11.6
B_CELL_NAIVE_55
11.4
B_CELL_NAIVE_56
11.2
B_CELL_NAIVE_57
11.2
B_CELL_NAIVE_58
11.0
B_CELL_NAIVE_59
11.0
B_CELL_NAIVE_60
11.0
B_CELL_NAIVE_61
10.8
B_CELL_NAIVE_62
10.8
B_CELL_NAIVE_63
10.6
B_CELL_NAIVE_64
10.4
B_CELL_NAIVE_65
10.3
B_CELL_NAIVE_66
10.2
B_CELL_NAIVE_67
9.9
B_CELL_NAIVE_68
9.8
B_CELL_NAIVE_69
9.7
B_CELL_NAIVE_70
9.4
B_CELL_NAIVE_71
9.1
B_CELL_NAIVE_72
9.1
B_CELL_NAIVE_73
8.9
B_CELL_NAIVE_74
8.7
B_CELL_NAIVE_75
8.6
B_CELL_NAIVE_76
8.5
B_CELL_NAIVE_77
8.4
B_CELL_NAIVE_78
8.2
B_CELL_NAIVE_79
7.5
B_CELL_NAIVE_80
7.4
B_CELL_NAIVE_81
7.2
B_CELL_NAIVE_82
7.1
B_CELL_NAIVE_83
6.9
B_CELL_NAIVE_84
6.8
B_CELL_NAIVE_85
6.6
B_CELL_NAIVE_86
6.2
B_CELL_NAIVE_87
6.1
B_CELL_NAIVE_88
5.1
B_CELL_NAIVE_89
4.6
B_CELL_NAIVE_90
4.3
B_CELL_NAIVE_91
3.7
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