A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.7
nTPM
Monaco:
147.0
nTPM
Schmiedel:
98.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.7
HPA sample
nTPM
Classical monocyte nTPM: 25.7
Samples: 6
Max nTPM: 46.4
Min nTPM: 13.3
P10809_1003
22.7
P10809_1020
23.9
P10809_1039
46.4
P10809_1058
15.1
P10809_1080
13.3
P10809_1107
32.8
Intermediate monocyte nTPM: 19.1
Samples: 6
Max nTPM: 35.7
Min nTPM: 9.1
P10809_1004
21.9
P10809_1023
19.8
P10809_1042
17.8
P10809_1061
9.1
P10809_1081
10.5
P10809_1108
35.7
Non-classical monocyte nTPM: 22.8
Samples: 5
Max nTPM: 30.4
Min nTPM: 10.9
P10809_1005
30.4
P10809_1053
14.9
P10809_1072
30.4
P10809_1082
10.9
P10809_1109
27.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
147.0
Monaco sample
nTPM
Classical monocyte nTPM: 147.1
Samples: 4
Max nTPM: 160.0
Min nTPM: 125.3
RHH5313_R3680
160.0
RHH5221_R3593
159.6
RHH5250_R3622
125.3
RHH5279_R3651
143.3
Intermediate monocyte nTPM: 146.9
Samples: 4
Max nTPM: 155.9
Min nTPM: 137.1
RHH5314_R3681
155.9
RHH5222_R3594
146.3
RHH5251_R3623
148.4
RHH5280_R3652
137.1
Non-classical monocyte nTPM: 147.1
Samples: 4
Max nTPM: 180.3
Min nTPM: 122.3
RHH5315_R3682
180.3
RHH5223_R3595
122.3
RHH5252_R3624
143.4
RHH5281_R3653
142.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
98.5
Schmiedel sample id
TPM
Classical monocyte TPM: 98.5
Samples: 91
Max TPM: 184.6
Min TPM: 38.1
MONOCYTES_1
184.6
MONOCYTES_2
173.3
MONOCYTES_3
159.1
MONOCYTES_4
158.3
MONOCYTES_5
154.4
MONOCYTES_6
148.4
MONOCYTES_7
147.8
MONOCYTES_8
147.7
MONOCYTES_9
146.8
MONOCYTES_10
144.3
MONOCYTES_11
143.8
MONOCYTES_12
143.8
MONOCYTES_13
141.4
MONOCYTES_14
141.2
MONOCYTES_15
140.1
MONOCYTES_16
139.3
MONOCYTES_17
138.2
MONOCYTES_18
136.7
MONOCYTES_19
135.0
MONOCYTES_20
132.3
MONOCYTES_21
131.7
MONOCYTES_22
128.0
MONOCYTES_23
126.1
MONOCYTES_24
125.3
MONOCYTES_25
125.2
MONOCYTES_26
124.1
MONOCYTES_27
120.0
MONOCYTES_28
119.2
MONOCYTES_29
118.8
MONOCYTES_30
114.8
MONOCYTES_31
114.1
MONOCYTES_32
113.5
MONOCYTES_33
112.0
MONOCYTES_34
106.0
MONOCYTES_35
105.2
MONOCYTES_36
104.9
MONOCYTES_37
104.2
MONOCYTES_38
102.7
MONOCYTES_39
102.3
MONOCYTES_40
101.7
MONOCYTES_41
99.9
MONOCYTES_42
99.0
MONOCYTES_43
97.3
MONOCYTES_44
96.3
MONOCYTES_45
95.9
MONOCYTES_46
95.6
MONOCYTES_47
93.7
MONOCYTES_48
92.2
MONOCYTES_49
91.8
MONOCYTES_50
89.0
MONOCYTES_51
88.6
MONOCYTES_52
87.4
MONOCYTES_53
87.3
MONOCYTES_54
85.4
MONOCYTES_55
84.6
MONOCYTES_56
84.5
MONOCYTES_57
84.0
MONOCYTES_58
83.6
MONOCYTES_59
83.4
MONOCYTES_60
79.1
MONOCYTES_61
78.2
MONOCYTES_62
76.7
MONOCYTES_63
76.6
MONOCYTES_64
71.9
MONOCYTES_65
71.8
MONOCYTES_66
71.7
MONOCYTES_67
70.9
MONOCYTES_68
70.8
MONOCYTES_69
70.2
MONOCYTES_70
68.8
MONOCYTES_71
68.2
MONOCYTES_72
66.6
MONOCYTES_73
65.7
MONOCYTES_74
65.5
MONOCYTES_75
65.3
MONOCYTES_76
64.9
MONOCYTES_77
64.6
MONOCYTES_78
64.2
MONOCYTES_79
63.2
MONOCYTES_80
55.1
MONOCYTES_81
53.7
MONOCYTES_82
53.3
MONOCYTES_83
52.6
MONOCYTES_84
52.6
MONOCYTES_85
52.3
MONOCYTES_86
51.2
MONOCYTES_87
50.2
MONOCYTES_88
47.5
MONOCYTES_89
45.8
MONOCYTES_90
42.8
MONOCYTES_91
38.1
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Non-classical monocyte TPM: 75.8
Samples: 90
Max TPM: 145.1
Min TPM: 23.6
M2_1
145.1
M2_2
138.4
M2_3
131.8
M2_4
131.4
M2_5
130.7
M2_6
129.7
M2_7
125.0
M2_8
123.2
M2_9
122.7
M2_10
118.4
M2_11
116.7
M2_12
108.5
M2_13
107.6
M2_14
107.1
M2_15
106.6
M2_16
105.7
M2_17
103.7
M2_18
101.8
M2_19
101.6
M2_20
101.4
M2_21
99.3
M2_22
98.1
M2_23
97.1
M2_24
96.8
M2_25
96.3
M2_26
95.9
M2_27
92.0
M2_28
91.5
M2_29
90.2
M2_30
89.5
M2_31
86.8
M2_32
86.4
M2_33
85.5
M2_34
85.0
M2_35
84.7
M2_36
82.1
M2_37
82.0
M2_38
81.3
M2_39
81.0
M2_40
80.5
M2_41
79.4
M2_42
78.5
M2_43
78.4
M2_44
77.8
M2_45
74.6
M2_46
72.9
M2_47
72.8
M2_48
72.6
M2_49
71.3
M2_50
70.2
M2_51
68.7
M2_52
68.5
M2_53
67.7
M2_54
67.4
M2_55
66.7
M2_56
66.6
M2_57
65.2
M2_58
61.7
M2_59
61.4
M2_60
59.2
M2_61
58.9
M2_62
58.8
M2_63
58.8
M2_64
57.8
M2_65
57.2
M2_66
55.9
M2_67
55.8
M2_68
49.4
M2_69
48.8
M2_70
46.7
M2_71
45.4
M2_72
45.2
M2_73
43.4
M2_74
41.8
M2_75
41.7
M2_76
40.4
M2_77
39.5
M2_78
38.6
M2_79
37.9
M2_80
37.8
M2_81
37.5
M2_82
36.8
M2_83
36.5
M2_84
36.3
M2_85
35.6
M2_86
34.9
M2_87
29.4
M2_88
28.8
M2_89
24.0
M2_90
23.6
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