MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:97.9 nTPM
HPA Brain:200.6 nTPM
GTEx:97.9 nTPM
FANTOM5:76.0 Scaled Tags Per Million
Pig:46.3 nTPM
Mouse:120.6 nTPM
Allen mouse:10.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 200.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 178.7
2586 Male, age 75, left hemisphere 237.2
2219 Male, age 76, both hemispheres 185.6
2828 Female, age 72, unknown 182.5
1827 Male, age 72, unknown 182.3
2666 Male, age 74, left hemisphere 177.6
2019 Male, age 18, unknown 168.5
2411 Female, age 72, unknown 168.5
1830 Male, age 51, unknown 165.4
1833 Male, age 53, unknown 163.9
1870 Female, age 42, unknown 155.1
Dorsal raphe nucleus
nTPM: 171.0
2047 Male, age 72, unknown 181.8
2298 Female, age 72, unknown 178.4
2750 Male, age 76, both hemispheres 172.1
2016 Female, age 72, unknown 161.5
1828 Male, age 53, unknown 161.3
Inferior colliculus
nTPM: 168.7
2097 Female, age 72, unknown 173.7
1890 Male, age 53, unknown 169.8
2849 Male, age 72, unknown 169.3
1848 Female, age 42, unknown 162.1
Median raphe nucleus
nTPM: 179.6
2220 Male, age 76, midline 179.6
Periaquaductal grey, anterior
nTPM: 200.6
2502 Female, age 75, unknown 207.9
1795 Male, age 51, unknown 199.0
1947 Male, age 18, unknown 194.8
Periaquaductal grey, dorsal
nTPM: 162.8
1840 Male, age 53, unknown 170.8
2464 Female, age 72, unknown 163.4
1831 Male, age 72, unknown 159.5
2850 Male, age 76, both hemispheres 157.6
Periaquaductal grey, lateral
nTPM: 168.4
2272 Male, age 74, both hemispheres 171.6
2140 Male, age 76, both hemispheres 168.1
2053 Male, age 18, unknown 165.4
Pretectal area
nTPM: 178.1
2007 Male, age 72, unknown 199.1
1816 Male, age 51, unknown 191.2
1817 Female, age 42, unknown 184.8
1944 Female, age 72, unknown 181.6
2407 Male, age 75, both hemispheres 177.4
1815 Male, age 53, unknown 174.9
2825 Male, age 18, unknown 174.8
2316 Male, age 76, right hemisphere 173.3
2224 Female, age 72, unknown 171.4
2667 Female, age 75, unknown 166.6
2273 Male, age 74, both hemispheres 164.5
Red nucleus
nTPM: 166.9
2584 Male, age 75, left hemisphere 202.1
2785 Male, age 18, unknown 182.2
2588 Male, age 74, left hemisphere 171.6
2227 Male, age 72, unknown 170.1
2769 Male, age 72, unknown 169.8
2725 Female, age 75, unknown 168.4
2503 Female, age 72, unknown 163.9
1904 Male, age 53, unknown 160.1
2823 Male, age 76, right hemisphere 158.5
1954 Female, age 42, unknown 154.5
1821 Female, age 72, unknown 151.5
1865 Male, age 51, unknown 150.1
Substantia nigra
nTPM: 173.0
1916 Female, age 42, unknown 198.8
1941 Male, age 53, unknown 190.8
2665 Male, age 74, both hemispheres 186.2
2583 Male, age 75, right hemisphere 185.4
1851 Male, age 51, unknown 178.6
1889 Female, age 72, unknown 167.3
2590 Female, age 75, unknown 166.0
2699 Male, age 18, unknown 162.0
2241 Male, age 72, unknown 149.2
2409 Female, age 72, unknown 145.7
Superior colliculus
nTPM: 176.2
2664 Male, age 75, both hemispheres 212.9
1796 Male, age 53, unknown 191.5
2261 Male, age 18, unknown 191.1
2668 Female, age 75, unknown 184.9
1839 Male, age 51, unknown 175.0
2087 Female, age 72, unknown 175.0
1995 Male, age 72, unknown 161.0
2587 Male, age 74, left hemisphere 159.4
1913 Female, age 42, unknown 157.2
1895 Male, age 76, right hemisphere 154.5
Ventral tegmental area
nTPM: 177.0
1942 Male, age 51, unknown 190.4
2218 Male, age 76, both hemispheres 188.4
1915 Female, age 42, unknown 179.4
2410 Female, age 72, unknown 176.5
2021 Male, age 53, unknown 167.6
2223 Female, age 72, unknown 159.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 97.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.9
Samples: 183

Max nTPM: 172.8
Min nTPM: 60.8
Std nTPM: 20.8
Median nTPM: 96.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 172.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 151.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 144.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 141.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 140.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 138.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 138.5
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 136.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 133.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 132.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 132.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 76.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 76.0
FF:10158-103A5 76 years, female 76.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 46.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.1
Samples: 4

Max nTPM: 49.5
Min nTPM: 32.9
Sample A Female 49.5
Sample B Female 35.8
Sample C Male 42.1
Sample D Male 32.9
Midbrain
nTPM: 44.5
Samples: 4

Max nTPM: 53.3
Min nTPM: 33.2
Sample A Female 53.3
Sample B Female 33.2
Sample C Male 50.1
Sample D Male 41.5
Periaqueductal gray
nTPM: 34.7
Samples: 3

Max nTPM: 39.2
Min nTPM: 31.5
Sample B Female 33.5
Sample C Male 39.2
Sample D Male 31.5
Superior colliculi
nTPM: 46.3
Samples: 4

Max nTPM: 50.3
Min nTPM: 43.8
Sample A Female 50.3
Sample B Female 45.8
Sample C Male 45.2
Sample D Male 43.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 120.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 120.6
Samples: 4

Max nTPM: 128.6
Min nTPM: 113.6
Sample A Male 128.6
Sample B Male 113.6
Sample C Female 117.8
Sample D Female 122.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.9
69059817 Antisense, RP_050317_04_B01, Mouse strain C57BL/6J (56 days, male) 10.9

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