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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:204.1 nTPM
HPA Brain:163.6 nTPM
GTEx:204.1 nTPM
FANTOM5:49.6 Scaled Tags Per Million
Pig:29.5 nTPM
Mouse:66.8 nTPM
Allen mouse:7.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.6
Sample id Sample description nTPM
Amygdala
nTPM: 163.6
1987 Female, age 91, left hemisphere 206.0
2517 Female, age 94, left hemisphere 199.3
2814 Male, age 76, right hemisphere 160.8
2514 Male, age 75, right hemisphere 133.4
2695 Female, age 67, right hemisphere 118.6
Basal amygdala
nTPM: 115.9
2110 Male, age 80, left hemisphere 163.0
1955 Male, age 76, both hemispheres 136.4
2243 Female, age 91, right hemisphere 132.4
2685 Female, age 94, left hemisphere 97.9
2827 Female, age 67, right hemisphere 87.9
2609 Male, age 75, right hemisphere 77.8
Central amygdala
nTPM: 127.9
2239 Male, age 80, left hemisphere 173.1
2826 Female, age 94, left hemisphere 144.2
1905 Male, age 76, both hemispheres 132.2
2515 Male, age 75, right hemisphere 107.9
2701 Female, age 91, right hemisphere 82.1
Corticomedial amygdala
nTPM: 86.0
2240 Male, age 76, both hemispheres 131.6
2829 Male, age 80, left hemisphere 115.9
2428 Male, age 75, right hemisphere 70.8
2242 Female, age 91, right hemisphere 67.1
2429 Female, age 94, left hemisphere 65.3
2535 Female, age 67, right hemisphere 65.2
Lateral amygdala
nTPM: 110.0
2256 Male, age 80, left hemisphere 157.8
2516 Male, age 75, right hemisphere 113.0
2830 Female, age 67, right hemisphere 108.4
2534 Female, age 94, left hemisphere 99.0
1883 Male, age 76, both hemispheres 97.2
2255 Female, age 91, right hemisphere 84.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

204.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 204.1
Samples: 181

Max nTPM: 789.1
Min nTPM: 54.2
Std nTPM: 107.2
Median nTPM: 181.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 789.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 607.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 576.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 560.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 559.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 489.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 469.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 440.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 426.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 424.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 415.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 394.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 344.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 340.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 335.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 328.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 327.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 317.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 315.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 312.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 307.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 307.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 305.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 294.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 294.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 282.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 281.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 277.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 276.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 268.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 263.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 263.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 260.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 260.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 260.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 259.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 257.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 256.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 252.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 251.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 249.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 242.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 242.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 238.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 238.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 237.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 237.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 236.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 235.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 234.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 232.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 232.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 227.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 226.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 225.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 225.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 224.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 222.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 221.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 221.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 221.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 210.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 210.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 206.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 206.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 204.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 201.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 201.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 201.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 200.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 200.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 199.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 199.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 198.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 197.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 197.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 193.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 192.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 192.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 189.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 188.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 188.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 187.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 187.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 184.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 184.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 182.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 182.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 181.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 181.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 181.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 181.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 178.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 177.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 176.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 176.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 175.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 175.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 173.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 171.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 171.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 171.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 169.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 167.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 166.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 165.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 165.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 165.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 164.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 163.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 162.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 162.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 162.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 161.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 159.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 158.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 157.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 157.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 156.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 155.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 154.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 151.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 150.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 150.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 149.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 149.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 148.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 148.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 147.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 147.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 146.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 145.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 144.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 143.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 142.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 142.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 141.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 140.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 139.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 138.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 137.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 135.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 129.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 129.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 127.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 122.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 122.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 121.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 119.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 118.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 117.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 116.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 116.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 113.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 111.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 111.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 107.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 107.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 106.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 105.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 105.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 105.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 104.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 103.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 99.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 98.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 98.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 94.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 92.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 91.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 90.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 89.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 89.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 89.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 88.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 81.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 69.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 60.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 60.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 57.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 54.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

49.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 49.6
FF:10151-102I7 76 years, female 49.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.5
Pig sample Sample description nTPM
Amygdala
nTPM: 29.5
Samples: 4

Max nTPM: 42.0
Min nTPM: 17.3
Sample A Female 36.0
Sample B Female 22.6
Sample C Male 42.0
Sample D Male 17.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 66.8
Samples: 4

Max nTPM: 77.6
Min nTPM: 62.3
Sample A Male 77.6
Sample B Male 62.5
Sample C Female 62.3
Sample D Female 64.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.1
68341262 Antisense, RP_041207_01_C02, Mouse strain C57BL/6J (56 days, male) 10.3
70813926 Antisense, RP_050725_02_F06, Mouse strain C57BL/6J (56 days, male) 3.9

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