MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:216.8 nTPM
HPA Brain:363.7 nTPM
GTEx:216.8 nTPM
FANTOM5:92.7 Scaled Tags Per Million
Pig:141.9 nTPM
Mouse:113.0 nTPM
Allen mouse:7.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 363.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 115.8
1870 Female, age 42, unknown 171.6
2828 Female, age 72, unknown 154.3
2411 Female, age 72, unknown 138.8
1833 Male, age 53, unknown 123.6
1827 Male, age 72, unknown 115.3
1830 Male, age 51, unknown 114.8
2019 Male, age 18, unknown 108.5
2219 Male, age 76, both hemispheres 86.0
2666 Male, age 74, left hemisphere 76.2
2586 Male, age 75, left hemisphere 68.6
Dorsal raphe nucleus
nTPM: 214.4
2298 Female, age 72, unknown 347.9
2016 Female, age 72, unknown 237.8
2750 Male, age 76, both hemispheres 185.5
1828 Male, age 53, unknown 162.2
2047 Male, age 72, unknown 138.5
Inferior colliculus
nTPM: 79.9
1848 Female, age 42, unknown 86.2
2849 Male, age 72, unknown 85.1
2097 Female, age 72, unknown 82.0
1890 Male, age 53, unknown 66.5
Median raphe nucleus
nTPM: 196.6
2220 Male, age 76, midline 196.6
Periaquaductal grey, anterior
nTPM: 145.9
1795 Male, age 51, unknown 197.9
2502 Female, age 75, unknown 147.5
1947 Male, age 18, unknown 92.5
Periaquaductal grey, dorsal
nTPM: 227.8
2850 Male, age 76, both hemispheres 433.5
1831 Male, age 72, unknown 181.3
1840 Male, age 53, unknown 171.6
2464 Female, age 72, unknown 124.8
Periaquaductal grey, lateral
nTPM: 363.7
2272 Male, age 74, both hemispheres 581.0
2140 Male, age 76, both hemispheres 329.0
2053 Male, age 18, unknown 181.2
Pretectal area
nTPM: 175.0
2273 Male, age 74, both hemispheres 539.6
2224 Female, age 72, unknown 206.4
2667 Female, age 75, unknown 205.7
2825 Male, age 18, unknown 168.8
1815 Male, age 53, unknown 137.8
2316 Male, age 76, right hemisphere 131.3
1944 Female, age 72, unknown 131.1
2407 Male, age 75, both hemispheres 114.8
1816 Male, age 51, unknown 113.4
1817 Female, age 42, unknown 91.6
2007 Male, age 72, unknown 84.9
Red nucleus
nTPM: 112.0
2785 Male, age 18, unknown 141.2
1865 Male, age 51, unknown 136.4
1904 Male, age 53, unknown 133.6
2227 Male, age 72, unknown 125.5
2769 Male, age 72, unknown 125.4
1954 Female, age 42, unknown 122.7
2503 Female, age 72, unknown 114.4
2823 Male, age 76, right hemisphere 109.7
2725 Female, age 75, unknown 100.8
2588 Male, age 74, left hemisphere 93.5
1821 Female, age 72, unknown 77.1
2584 Male, age 75, left hemisphere 63.3
Substantia nigra
nTPM: 93.0
2699 Male, age 18, unknown 142.0
1851 Male, age 51, unknown 110.6
1941 Male, age 53, unknown 97.5
2241 Male, age 72, unknown 96.5
2409 Female, age 72, unknown 94.9
2583 Male, age 75, right hemisphere 89.5
2590 Female, age 75, unknown 85.6
1889 Female, age 72, unknown 79.4
1916 Female, age 42, unknown 75.8
2665 Male, age 74, both hemispheres 57.8
Superior colliculus
nTPM: 158.6
1995 Male, age 72, unknown 277.3
1913 Female, age 42, unknown 244.1
2587 Male, age 74, left hemisphere 188.0
2261 Male, age 18, unknown 182.5
1796 Male, age 53, unknown 140.5
2087 Female, age 72, unknown 139.0
2668 Female, age 75, unknown 117.7
2664 Male, age 75, both hemispheres 116.5
1839 Male, age 51, unknown 99.8
1895 Male, age 76, right hemisphere 81.0
Ventral tegmental area
nTPM: 127.1
2021 Male, age 53, unknown 175.3
1915 Female, age 42, unknown 130.8
2223 Female, age 72, unknown 126.7
1942 Male, age 51, unknown 110.8
2410 Female, age 72, unknown 110.3
2218 Male, age 76, both hemispheres 108.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 216.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 216.8
Samples: 183

Max nTPM: 1189.9
Min nTPM: 36.9
Std nTPM: 155.4
Median nTPM: 175.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1189.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 818.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 795.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 732.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 718.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 676.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 661.3
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 557.7
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 547.7
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 512.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 442.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 92.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.7
FF:10158-103A5 76 years, female 92.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 141.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 136.2
Samples: 4

Max nTPM: 208.9
Min nTPM: 86.4
Sample A Female 208.9
Sample B Female 86.4
Sample C Male 117.4
Sample D Male 131.9
Midbrain
nTPM: 141.9
Samples: 4

Max nTPM: 325.7
Min nTPM: 54.2
Sample A Female 325.7
Sample B Female 101.0
Sample C Male 86.5
Sample D Male 54.2
Periaqueductal gray
nTPM: 138.4
Samples: 3

Max nTPM: 166.3
Min nTPM: 104.9
Sample B Female 104.9
Sample C Male 166.3
Sample D Male 144.1
Superior colliculi
nTPM: 98.8
Samples: 4

Max nTPM: 116.6
Min nTPM: 89.7
Sample A Female 116.6
Sample B Female 89.7
Sample C Male 89.7
Sample D Male 99.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 113.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.1
Samples: 4

Max nTPM: 127.3
Min nTPM: 100.9
Sample A Male 118.8
Sample B Male 100.9
Sample C Female 105.2
Sample D Female 127.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.4
68341262 Antisense, RP_041207_01_C02, Mouse strain C57BL/6J (56 days, male) 8.4
70813926 Antisense, RP_050725_02_F06, Mouse strain C57BL/6J (56 days, male) 6.5

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