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  • TPPP3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:320.0 nTPM
HPA Brain:217.5 nTPM
GTEx:320.0 nTPM
FANTOM5:59.0 Scaled Tags Per Million
Pig:240.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 217.5
1981 Female, age 72, midline 299.9
2565 Male, age 75, midline 259.6
2048 Male, age 55, midline 198.9
2816 Male, age 47, midline 181.5
2194 Female, age 79, both hemispheres 147.5
Cervical spinal cord, dorsal horn
nTPM: 141.2
2173 Female, age 72, unknown 247.0
2296 Male, age 66, both hemispheres 163.6
2069 Male, age 47, both hemispheres 130.6
1877 Male, age 55, unknown 119.7
2721 Male, age 90, both hemispheres 105.6
2297 Male, age 75, both hemispheres 80.7
Cervical spinal cord, ventral horn
nTPM: 163.1
2098 Female, age 72, unknown 274.4
2295 Male, age 66, both hemispheres 176.9
2809 Male, age 90, both hemispheres 148.0
2068 Male, age 55, unknown 147.4
2820 Female, age 79, both hemispheres 130.6
2480 Male, age 75, both hemispheres 101.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

320.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 320.0
Samples: 204

Max nTPM: 642.0
Min nTPM: 73.2
Std nTPM: 131.1
Median nTPM: 323.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 642.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 623.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 606.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 591.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 589.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 577.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 576.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 563.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 558.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 554.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 554.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 552.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 547.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 544.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 540.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 530.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 529.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 524.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 519.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 517.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 496.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 492.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 489.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 485.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 483.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 480.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 476.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 474.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 471.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 469.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 468.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 457.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 456.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 453.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 452.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 446.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 445.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 440.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 434.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 434.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 434.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 428.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 426.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 425.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 423.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 416.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 413.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 413.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 407.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 406.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 403.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 399.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 398.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 394.3
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 394.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 393.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 393.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 393.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 391.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 390.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 388.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 388.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 386.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 381.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 381.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 377.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 377.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 374.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 373.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 373.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 368.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 365.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 361.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 359.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 358.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 353.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 353.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 352.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 351.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 350.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 349.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 349.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 348.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 347.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 346.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 344.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 344.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 344.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 342.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 337.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 337.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 336.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 334.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 333.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 333.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 331.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 330.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 329.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 329.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 324.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 323.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 323.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 323.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 321.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 319.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 318.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 317.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 313.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 311.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 306.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 301.7
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 299.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 296.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 296.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 296.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 295.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 295.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 293.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 293.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 293.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 293.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 292.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 291.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 290.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 289.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 286.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 284.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 284.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 277.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 273.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 272.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 266.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 265.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 265.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 264.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 263.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 263.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 258.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 252.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 247.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 247.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 238.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 238.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 237.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 237.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 234.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 234.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 229.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 227.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 219.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 217.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 215.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 215.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 214.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 213.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 213.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 209.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 209.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 203.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 198.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 198.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 197.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 197.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 192.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 189.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 188.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 187.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 186.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 183.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 181.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 174.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 170.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 170.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 169.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 168.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 166.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 158.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 157.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 153.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 152.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 151.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 149.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 147.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 146.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 146.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 144.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 142.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 140.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 138.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 137.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 126.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 118.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 115.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 111.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 106.6
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 101.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 101.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 95.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 91.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 88.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 79.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 75.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 74.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 73.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

59.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 59.0
FF:10181-103D1 60 years, female 88.7
FF:10159-103A6 76 years, female 29.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 148.1
Samples: 4

Max nTPM: 179.0
Min nTPM: 122.4
Sample A Female 158.6
Sample B Female 122.4
Sample C Male 179.0
Sample D Male 132.2
Ventral spinal cord
nTPM: 240.0
Samples: 4

Max nTPM: 257.9
Min nTPM: 215.0
Sample A Female 232.9
Sample B Female 257.9
Sample C Male 254.2
Sample D Male 215.0

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