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  • SUMMARY

  • TISSUE

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  • BLOOD

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  • CALM3
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:751.5 nTPM
FANTOM5:1289.1 Scaled Tags Per Million
Pig:1473.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA044999
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

751.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 751.5
Samples: 300

Max nTPM: 2486.6
Min nTPM: 149.5
Std nTPM: 466.0
Median nTPM: 652.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2486.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 2063.2
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1957.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1820.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1789.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1782.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1723.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1716.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1704.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1668.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1662.3
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1659.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1627.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1621.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1609.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1605.9
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 1605.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1588.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1577.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1570.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1561.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1558.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1557.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1553.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1552.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1522.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1518.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1512.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1489.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1470.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1466.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1440.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1439.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1432.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1418.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1402.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1402.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1394.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1394.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1388.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1384.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1355.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1343.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1327.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1317.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1306.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 1303.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1303.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1299.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1298.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1295.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1254.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1245.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 1240.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 1220.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 1216.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1211.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1207.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1195.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1194.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1189.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1181.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1180.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1162.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 1161.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1145.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1139.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1114.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1093.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1087.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1082.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 1077.5
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1072.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1058.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 1052.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1045.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1019.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1017.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1015.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1013.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1012.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1011.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1005.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 998.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 986.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 984.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 978.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 966.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 964.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 962.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 960.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 958.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 954.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 953.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 950.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 940.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 939.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 932.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 921.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 918.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 915.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 911.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 910.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 909.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 906.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 904.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 895.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 883.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 874.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 869.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 863.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 848.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 847.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 827.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 824.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 820.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 818.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 812.5
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 810.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 809.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 806.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 805.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 801.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 801.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 800.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 792.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 791.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 789.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 782.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 780.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 749.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 745.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 741.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 731.8
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 722.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 720.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 719.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 719.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 714.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 711.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 705.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 701.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 692.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 684.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 682.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 677.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 675.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 665.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 656.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 654.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 650.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 637.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 630.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 626.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 625.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 610.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 602.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 598.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 593.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 593.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 591.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 591.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 589.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 579.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 572.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 570.1
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 569.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 561.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 560.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 553.5
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 548.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 540.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 534.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 534.6
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 529.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 528.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 527.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 522.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 520.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 519.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 519.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 511.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 507.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 504.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 498.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 496.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 488.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 488.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 487.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 476.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 475.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 470.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 469.1
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 464.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 459.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 454.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 445.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 439.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 430.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 429.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 425.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 420.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 417.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 408.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 402.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 398.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 396.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 396.7
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 387.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 385.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 382.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 379.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 379.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 379.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 377.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 375.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 367.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 364.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 355.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 351.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 348.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 344.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 344.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 342.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 338.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 325.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 324.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 324.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 324.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 321.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 317.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 316.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 315.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 312.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 311.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 303.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 302.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 300.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 293.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 290.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 289.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 279.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 279.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 278.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 276.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 276.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 274.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 274.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 273.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 273.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 273.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 273.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 273.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 271.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 268.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 268.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 266.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 265.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 263.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 262.7
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 261.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 259.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 259.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 257.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 256.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 255.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 255.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 253.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 252.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 247.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 242.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 241.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 238.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 237.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 228.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 226.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 226.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 226.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 223.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 220.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 213.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 211.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 210.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 207.2
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 206.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 203.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 198.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 198.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 197.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 197.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 196.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 195.5
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 193.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 191.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 190.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 189.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 186.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 183.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 182.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 149.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1289.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1289.1
FF:10164-103B2 76 years, female 1289.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1473.8
Pig sample Sample description nTPM
Caudate
nTPM: 1473.8
Samples: 4

Max nTPM: 1836.9
Min nTPM: 1132.0
Sample A Female 1132.0
Sample B Female 1642.7
Sample C Male 1836.9
Sample D Male 1283.7

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