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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • RPL8
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:3004.7 nTPM
Monaco:1344.3 nTPM
Schmiedel:1084.0 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

3004.7
HPA sample nTPM
Memory B-cell
nTPM: 2983.3
Samples: 6

Max nTPM: 5192.2
Min nTPM: 1925.0
P10809_1017 1925.0
P10809_1025 2465.7
P10809_1044 5192.2
P10809_1063 2675.6
P10809_1092 2732.4
P10809_1105 2908.6
Naive B-cell
nTPM: 3004.8
Samples: 6

Max nTPM: 4201.7
Min nTPM: 2439.6
P10809_1011 2439.6
P10809_1029 2494.7
P10809_1048 4201.7
P10809_1067 2774.5
P10809_1091 2965.7
P10809_1104 3152.3

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1344.3
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 1313.2
Samples: 4

Max nTPM: 2131.4
Min nTPM: 646.2
RHH5310_R3677 1617.7
RHH5218_R3590 646.2
RHH5247_R3619 2131.4
RHH5276_R3648 857.6
Naive B-cell
nTPM: 1343.7
Samples: 4

Max nTPM: 2142.8
Min nTPM: 986.9
RHH5308_R3675 2142.8
RHH5216_R3588 986.9
RHH5245_R3617 1236.8
RHH5274_R3646 1008.1
Non-switched memory B-cell
nTPM: 1302.0
Samples: 4

Max nTPM: 1807.4
Min nTPM: 961.4
RHH5309_R3676 1807.4
RHH5217_R3589 980.4
RHH5246_R3618 1458.8
RHH5275_R3647 961.4
Plasmablast
nTPM: 997.6
Samples: 4

Max nTPM: 1162.3
Min nTPM: 848.6
RHH5312_R3679 1162.3
RHH5220_R3592 848.6
RHH5249_R3621 1068.3
RHH5278_R3650 911.1
Switched memory B-cell
nTPM: 1344.3
Samples: 4

Max nTPM: 2450.7
Min nTPM: 831.3
RHH5311_R3678 2450.7
RHH5219_R3591 1219.6
RHH5248_R3620 831.3
RHH5277_R3649 875.7

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1084.0
Schmiedel sample id TPM
Naive B-cell
TPM: 1084.0
Samples: 91

Max TPM: 1872.5
Min TPM: 150.3
B_CELL_NAIVE_1 1872.5
B_CELL_NAIVE_2 1802.4
B_CELL_NAIVE_3 1676.5
B_CELL_NAIVE_4 1675.6
B_CELL_NAIVE_5 1655.3
B_CELL_NAIVE_6 1608.2
B_CELL_NAIVE_7 1585.5
B_CELL_NAIVE_8 1581.4
B_CELL_NAIVE_9 1579.9
B_CELL_NAIVE_10 1563.6
B_CELL_NAIVE_11 1561.7
B_CELL_NAIVE_12 1542.5
B_CELL_NAIVE_13 1542.0
B_CELL_NAIVE_14 1526.9
B_CELL_NAIVE_15 1507.2
B_CELL_NAIVE_16 1501.1
B_CELL_NAIVE_17 1499.7
B_CELL_NAIVE_18 1493.1
B_CELL_NAIVE_19 1486.6
B_CELL_NAIVE_20 1469.2
B_CELL_NAIVE_21 1431.0
B_CELL_NAIVE_22 1429.4
B_CELL_NAIVE_23 1415.5
B_CELL_NAIVE_24 1410.3
B_CELL_NAIVE_25 1400.2
B_CELL_NAIVE_26 1395.9
B_CELL_NAIVE_27 1362.9
B_CELL_NAIVE_28 1340.7
B_CELL_NAIVE_29 1335.2
B_CELL_NAIVE_30 1311.2
B_CELL_NAIVE_31 1299.3
B_CELL_NAIVE_32 1294.5
B_CELL_NAIVE_33 1268.3
B_CELL_NAIVE_34 1262.7
B_CELL_NAIVE_35 1258.0
B_CELL_NAIVE_36 1249.3
B_CELL_NAIVE_37 1248.7
B_CELL_NAIVE_38 1218.7
B_CELL_NAIVE_39 1199.5
B_CELL_NAIVE_40 1187.1
B_CELL_NAIVE_41 1168.4
B_CELL_NAIVE_42 1147.3
B_CELL_NAIVE_43 1140.7
B_CELL_NAIVE_44 1125.6
B_CELL_NAIVE_45 1121.1
B_CELL_NAIVE_46 1110.9
B_CELL_NAIVE_47 1104.7
B_CELL_NAIVE_48 1100.8
B_CELL_NAIVE_49 1090.0
B_CELL_NAIVE_50 1077.0
B_CELL_NAIVE_51 1045.3
B_CELL_NAIVE_52 1026.2
B_CELL_NAIVE_53 1003.0
B_CELL_NAIVE_54 1000.4
B_CELL_NAIVE_55 997.9
B_CELL_NAIVE_56 979.2
B_CELL_NAIVE_57 942.3
B_CELL_NAIVE_58 935.7
B_CELL_NAIVE_59 934.7
B_CELL_NAIVE_60 929.4
B_CELL_NAIVE_61 903.4
B_CELL_NAIVE_62 903.1
B_CELL_NAIVE_63 903.0
B_CELL_NAIVE_64 874.4
B_CELL_NAIVE_65 870.8
B_CELL_NAIVE_66 870.1
B_CELL_NAIVE_67 869.9
B_CELL_NAIVE_68 854.7
B_CELL_NAIVE_69 851.1
B_CELL_NAIVE_70 843.2
B_CELL_NAIVE_71 843.1
B_CELL_NAIVE_72 837.1
B_CELL_NAIVE_73 786.3
B_CELL_NAIVE_74 721.3
B_CELL_NAIVE_75 718.8
B_CELL_NAIVE_76 695.8
B_CELL_NAIVE_77 682.5
B_CELL_NAIVE_78 638.5
B_CELL_NAIVE_79 627.3
B_CELL_NAIVE_80 549.1
B_CELL_NAIVE_81 536.5
B_CELL_NAIVE_82 511.5
B_CELL_NAIVE_83 437.1
B_CELL_NAIVE_84 404.7
B_CELL_NAIVE_85 372.5
B_CELL_NAIVE_86 326.1
B_CELL_NAIVE_87 317.3
B_CELL_NAIVE_88 272.9
B_CELL_NAIVE_89 243.5
B_CELL_NAIVE_90 202.1
B_CELL_NAIVE_91 150.3
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