A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1472.8
nTPM
Monaco:
303.5
nTPM
Schmiedel:
549.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1472.8
HPA sample
nTPM
NK-cell nTPM: 1472.8
Samples: 6
Max nTPM: 1844.4
Min nTPM: 945.6
P10809_1013
973.3
P10809_1033
1625.1
P10809_1052
1628.8
P10809_1071
1819.7
P10809_1093
945.6
P10809_1103
1844.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
303.5
Monaco sample
nTPM
NK-cell nTPM: 303.5
Samples: 4
Max nTPM: 419.2
Min nTPM: 214.2
RHH5316_R3683
419.2
RHH5224_R3596
288.0
RHH5253_R3625
214.2
RHH5282_R3654
292.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
549.5
Schmiedel sample id
TPM
NK-cell TPM: 549.5
Samples: 90
Max TPM: 1135.5
Min TPM: 145.6
NK_1
1135.5
NK_2
912.1
NK_3
912.0
NK_4
894.3
NK_5
860.8
NK_6
855.5
NK_7
843.7
NK_8
842.2
NK_9
820.0
NK_10
796.0
NK_11
794.5
NK_12
783.0
NK_13
782.7
NK_14
771.6
NK_15
752.8
NK_16
747.3
NK_17
747.0
NK_18
742.8
NK_19
729.4
NK_20
725.4
NK_21
712.8
NK_22
691.5
NK_23
686.6
NK_24
682.9
NK_25
682.1
NK_26
680.6
NK_27
667.7
NK_28
667.0
NK_29
664.6
NK_30
661.7
NK_31
659.9
NK_32
656.5
NK_33
656.0
NK_34
652.2
NK_35
626.4
NK_36
617.5
NK_37
609.4
NK_38
595.8
NK_39
594.1
NK_40
580.6
NK_41
575.1
NK_42
568.9
NK_43
557.0
NK_44
555.6
NK_45
541.2
NK_46
541.1
NK_47
535.5
NK_48
524.0
NK_49
522.7
NK_50
517.6
NK_51
513.1
NK_52
512.0
NK_53
509.1
NK_54
496.7
NK_55
493.5
NK_56
490.8
NK_57
488.1
NK_58
473.2
NK_59
455.3
NK_60
452.0
NK_61
443.2
NK_62
426.4
NK_63
421.3
NK_64
419.4
NK_65
409.7
NK_66
406.1
NK_67
393.1
NK_68
378.4
NK_69
376.5
NK_70
375.7
NK_71
374.6
NK_72
374.0
NK_73
369.4
NK_74
363.2
NK_75
351.2
NK_76
338.8
NK_77
332.4
NK_78
331.9
NK_79
313.8
NK_80
307.3
NK_81
276.3
NK_82
256.5
NK_83
241.6
NK_84
221.5
NK_85
219.5
NK_86
218.6
NK_87
196.6
NK_88
191.7
NK_89
166.4
NK_90
145.6
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