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BETA
  • SUMMARY

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  • BRAIN

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  • RPL26
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:2419.9 nTPM
Monaco:517.4 nTPM
Schmiedel:538.7 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

2419.9
HPA sample nTPM
Memory B-cell
nTPM: 2419.9
Samples: 6

Max nTPM: 3096.3
Min nTPM: 2049.3
P10809_1017 2049.3
P10809_1025 2414.9
P10809_1044 3096.3
P10809_1063 2420.0
P10809_1092 2188.6
P10809_1105 2350.3
Naive B-cell
nTPM: 2163.3
Samples: 6

Max nTPM: 3015.8
Min nTPM: 1741.6
P10809_1011 1741.6
P10809_1029 1802.8
P10809_1048 3015.8
P10809_1067 2292.1
P10809_1091 1871.4
P10809_1104 2256.2

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

517.4
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 486.1
Samples: 4

Max nTPM: 832.1
Min nTPM: 116.3
RHH5310_R3677 446.1
RHH5218_R3590 116.3
RHH5247_R3619 832.1
RHH5276_R3648 549.7
Naive B-cell
nTPM: 517.5
Samples: 4

Max nTPM: 921.0
Min nTPM: 178.1
RHH5308_R3675 577.8
RHH5216_R3588 178.1
RHH5245_R3617 921.0
RHH5274_R3646 392.9
Non-switched memory B-cell
nTPM: 371.7
Samples: 4

Max nTPM: 615.7
Min nTPM: 169.6
RHH5309_R3676 483.9
RHH5217_R3589 169.6
RHH5246_R3618 217.6
RHH5275_R3647 615.7
Plasmablast
nTPM: 369.7
Samples: 4

Max nTPM: 504.4
Min nTPM: 198.3
RHH5312_R3679 504.4
RHH5220_R3592 198.3
RHH5249_R3621 356.2
RHH5278_R3650 420.0
Switched memory B-cell
nTPM: 323.2
Samples: 4

Max nTPM: 484.2
Min nTPM: 184.6
RHH5311_R3678 375.5
RHH5219_R3591 248.6
RHH5248_R3620 184.6
RHH5277_R3649 484.2

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

538.7
Schmiedel sample id TPM
Naive B-cell
TPM: 538.7
Samples: 91

Max TPM: 901.6
Min TPM: 392.4
B_CELL_NAIVE_1 901.6
B_CELL_NAIVE_2 734.4
B_CELL_NAIVE_3 694.4
B_CELL_NAIVE_4 664.7
B_CELL_NAIVE_5 642.5
B_CELL_NAIVE_6 641.2
B_CELL_NAIVE_7 630.2
B_CELL_NAIVE_8 628.2
B_CELL_NAIVE_9 615.0
B_CELL_NAIVE_10 614.8
B_CELL_NAIVE_11 614.2
B_CELL_NAIVE_12 608.7
B_CELL_NAIVE_13 600.5
B_CELL_NAIVE_14 598.9
B_CELL_NAIVE_15 593.0
B_CELL_NAIVE_16 592.3
B_CELL_NAIVE_17 590.6
B_CELL_NAIVE_18 588.0
B_CELL_NAIVE_19 585.6
B_CELL_NAIVE_20 584.9
B_CELL_NAIVE_21 584.7
B_CELL_NAIVE_22 581.0
B_CELL_NAIVE_23 578.6
B_CELL_NAIVE_24 577.1
B_CELL_NAIVE_25 576.3
B_CELL_NAIVE_26 576.1
B_CELL_NAIVE_27 575.1
B_CELL_NAIVE_28 565.0
B_CELL_NAIVE_29 564.6
B_CELL_NAIVE_30 555.9
B_CELL_NAIVE_31 554.8
B_CELL_NAIVE_32 552.6
B_CELL_NAIVE_33 551.8
B_CELL_NAIVE_34 551.6
B_CELL_NAIVE_35 548.4
B_CELL_NAIVE_36 544.8
B_CELL_NAIVE_37 541.7
B_CELL_NAIVE_38 540.1
B_CELL_NAIVE_39 540.1
B_CELL_NAIVE_40 539.8
B_CELL_NAIVE_41 537.6
B_CELL_NAIVE_42 537.4
B_CELL_NAIVE_43 536.6
B_CELL_NAIVE_44 534.1
B_CELL_NAIVE_45 534.0
B_CELL_NAIVE_46 533.8
B_CELL_NAIVE_47 533.6
B_CELL_NAIVE_48 533.0
B_CELL_NAIVE_49 528.0
B_CELL_NAIVE_50 527.3
B_CELL_NAIVE_51 525.9
B_CELL_NAIVE_52 524.2
B_CELL_NAIVE_53 522.9
B_CELL_NAIVE_54 521.8
B_CELL_NAIVE_55 519.7
B_CELL_NAIVE_56 518.2
B_CELL_NAIVE_57 517.8
B_CELL_NAIVE_58 515.7
B_CELL_NAIVE_59 514.6
B_CELL_NAIVE_60 509.9
B_CELL_NAIVE_61 507.6
B_CELL_NAIVE_62 504.7
B_CELL_NAIVE_63 502.4
B_CELL_NAIVE_64 500.9
B_CELL_NAIVE_65 498.9
B_CELL_NAIVE_66 492.3
B_CELL_NAIVE_67 492.0
B_CELL_NAIVE_68 488.7
B_CELL_NAIVE_69 486.1
B_CELL_NAIVE_70 486.1
B_CELL_NAIVE_71 482.8
B_CELL_NAIVE_72 476.6
B_CELL_NAIVE_73 476.4
B_CELL_NAIVE_74 475.2
B_CELL_NAIVE_75 470.7
B_CELL_NAIVE_76 469.1
B_CELL_NAIVE_77 468.6
B_CELL_NAIVE_78 468.6
B_CELL_NAIVE_79 468.3
B_CELL_NAIVE_80 466.8
B_CELL_NAIVE_81 466.8
B_CELL_NAIVE_82 464.2
B_CELL_NAIVE_83 463.6
B_CELL_NAIVE_84 457.6
B_CELL_NAIVE_85 457.1
B_CELL_NAIVE_86 448.9
B_CELL_NAIVE_87 446.1
B_CELL_NAIVE_88 445.4
B_CELL_NAIVE_89 428.3
B_CELL_NAIVE_90 416.9
B_CELL_NAIVE_91 392.4
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