A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2419.9
nTPM
Monaco:
517.4
nTPM
Schmiedel:
538.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2419.9
HPA sample
nTPM
Memory B-cell nTPM: 2419.9
Samples: 6
Max nTPM: 3096.3
Min nTPM: 2049.3
P10809_1017
2049.3
P10809_1025
2414.9
P10809_1044
3096.3
P10809_1063
2420.0
P10809_1092
2188.6
P10809_1105
2350.3
Naive B-cell nTPM: 2163.3
Samples: 6
Max nTPM: 3015.8
Min nTPM: 1741.6
P10809_1011
1741.6
P10809_1029
1802.8
P10809_1048
3015.8
P10809_1067
2292.1
P10809_1091
1871.4
P10809_1104
2256.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
517.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 486.1
Samples: 4
Max nTPM: 832.1
Min nTPM: 116.3
RHH5310_R3677
446.1
RHH5218_R3590
116.3
RHH5247_R3619
832.1
RHH5276_R3648
549.7
Naive B-cell nTPM: 517.5
Samples: 4
Max nTPM: 921.0
Min nTPM: 178.1
RHH5308_R3675
577.8
RHH5216_R3588
178.1
RHH5245_R3617
921.0
RHH5274_R3646
392.9
Non-switched memory B-cell nTPM: 371.7
Samples: 4
Max nTPM: 615.7
Min nTPM: 169.6
RHH5309_R3676
483.9
RHH5217_R3589
169.6
RHH5246_R3618
217.6
RHH5275_R3647
615.7
Plasmablast nTPM: 369.7
Samples: 4
Max nTPM: 504.4
Min nTPM: 198.3
RHH5312_R3679
504.4
RHH5220_R3592
198.3
RHH5249_R3621
356.2
RHH5278_R3650
420.0
Switched memory B-cell nTPM: 323.2
Samples: 4
Max nTPM: 484.2
Min nTPM: 184.6
RHH5311_R3678
375.5
RHH5219_R3591
248.6
RHH5248_R3620
184.6
RHH5277_R3649
484.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
538.7
Schmiedel sample id
TPM
Naive B-cell TPM: 538.7
Samples: 91
Max TPM: 901.6
Min TPM: 392.4
B_CELL_NAIVE_1
901.6
B_CELL_NAIVE_2
734.4
B_CELL_NAIVE_3
694.4
B_CELL_NAIVE_4
664.7
B_CELL_NAIVE_5
642.5
B_CELL_NAIVE_6
641.2
B_CELL_NAIVE_7
630.2
B_CELL_NAIVE_8
628.2
B_CELL_NAIVE_9
615.0
B_CELL_NAIVE_10
614.8
B_CELL_NAIVE_11
614.2
B_CELL_NAIVE_12
608.7
B_CELL_NAIVE_13
600.5
B_CELL_NAIVE_14
598.9
B_CELL_NAIVE_15
593.0
B_CELL_NAIVE_16
592.3
B_CELL_NAIVE_17
590.6
B_CELL_NAIVE_18
588.0
B_CELL_NAIVE_19
585.6
B_CELL_NAIVE_20
584.9
B_CELL_NAIVE_21
584.7
B_CELL_NAIVE_22
581.0
B_CELL_NAIVE_23
578.6
B_CELL_NAIVE_24
577.1
B_CELL_NAIVE_25
576.3
B_CELL_NAIVE_26
576.1
B_CELL_NAIVE_27
575.1
B_CELL_NAIVE_28
565.0
B_CELL_NAIVE_29
564.6
B_CELL_NAIVE_30
555.9
B_CELL_NAIVE_31
554.8
B_CELL_NAIVE_32
552.6
B_CELL_NAIVE_33
551.8
B_CELL_NAIVE_34
551.6
B_CELL_NAIVE_35
548.4
B_CELL_NAIVE_36
544.8
B_CELL_NAIVE_37
541.7
B_CELL_NAIVE_38
540.1
B_CELL_NAIVE_39
540.1
B_CELL_NAIVE_40
539.8
B_CELL_NAIVE_41
537.6
B_CELL_NAIVE_42
537.4
B_CELL_NAIVE_43
536.6
B_CELL_NAIVE_44
534.1
B_CELL_NAIVE_45
534.0
B_CELL_NAIVE_46
533.8
B_CELL_NAIVE_47
533.6
B_CELL_NAIVE_48
533.0
B_CELL_NAIVE_49
528.0
B_CELL_NAIVE_50
527.3
B_CELL_NAIVE_51
525.9
B_CELL_NAIVE_52
524.2
B_CELL_NAIVE_53
522.9
B_CELL_NAIVE_54
521.8
B_CELL_NAIVE_55
519.7
B_CELL_NAIVE_56
518.2
B_CELL_NAIVE_57
517.8
B_CELL_NAIVE_58
515.7
B_CELL_NAIVE_59
514.6
B_CELL_NAIVE_60
509.9
B_CELL_NAIVE_61
507.6
B_CELL_NAIVE_62
504.7
B_CELL_NAIVE_63
502.4
B_CELL_NAIVE_64
500.9
B_CELL_NAIVE_65
498.9
B_CELL_NAIVE_66
492.3
B_CELL_NAIVE_67
492.0
B_CELL_NAIVE_68
488.7
B_CELL_NAIVE_69
486.1
B_CELL_NAIVE_70
486.1
B_CELL_NAIVE_71
482.8
B_CELL_NAIVE_72
476.6
B_CELL_NAIVE_73
476.4
B_CELL_NAIVE_74
475.2
B_CELL_NAIVE_75
470.7
B_CELL_NAIVE_76
469.1
B_CELL_NAIVE_77
468.6
B_CELL_NAIVE_78
468.6
B_CELL_NAIVE_79
468.3
B_CELL_NAIVE_80
466.8
B_CELL_NAIVE_81
466.8
B_CELL_NAIVE_82
464.2
B_CELL_NAIVE_83
463.6
B_CELL_NAIVE_84
457.6
B_CELL_NAIVE_85
457.1
B_CELL_NAIVE_86
448.9
B_CELL_NAIVE_87
446.1
B_CELL_NAIVE_88
445.4
B_CELL_NAIVE_89
428.3
B_CELL_NAIVE_90
416.9
B_CELL_NAIVE_91
392.4
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.