A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1534.5
nTPM
Monaco:
399.5
nTPM
Schmiedel:
411.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1534.5
HPA sample
nTPM
Classical monocyte nTPM: 1534.4
Samples: 6
Max nTPM: 2653.2
Min nTPM: 966.9
P10809_1003
2653.2
P10809_1020
1228.2
P10809_1039
1465.9
P10809_1058
1323.8
P10809_1080
966.9
P10809_1107
1568.6
Intermediate monocyte nTPM: 1280.6
Samples: 6
Max nTPM: 1866.8
Min nTPM: 851.5
P10809_1004
1087.7
P10809_1023
1531.7
P10809_1042
1242.9
P10809_1061
851.5
P10809_1081
1102.7
P10809_1108
1866.8
Non-classical monocyte nTPM: 1179.4
Samples: 5
Max nTPM: 1680.3
Min nTPM: 872.2
P10809_1005
1256.2
P10809_1053
1096.9
P10809_1072
872.2
P10809_1082
991.2
P10809_1109
1680.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
399.5
Monaco sample
nTPM
Classical monocyte nTPM: 282.8
Samples: 4
Max nTPM: 379.7
Min nTPM: 227.7
RHH5313_R3680
379.7
RHH5221_R3593
235.5
RHH5250_R3622
227.7
RHH5279_R3651
288.1
Intermediate monocyte nTPM: 399.5
Samples: 4
Max nTPM: 500.8
Min nTPM: 236.1
RHH5314_R3681
430.4
RHH5222_R3594
430.8
RHH5251_R3623
500.8
RHH5280_R3652
236.1
Non-classical monocyte nTPM: 295.0
Samples: 4
Max nTPM: 419.8
Min nTPM: 173.0
RHH5315_R3682
419.8
RHH5223_R3595
288.0
RHH5252_R3624
299.2
RHH5281_R3653
173.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
411.5
Schmiedel sample id
TPM
Classical monocyte TPM: 411.5
Samples: 91
Max TPM: 574.0
Min TPM: 320.1
MONOCYTES_1
574.0
MONOCYTES_2
543.1
MONOCYTES_3
521.5
MONOCYTES_4
497.4
MONOCYTES_5
486.3
MONOCYTES_6
482.1
MONOCYTES_7
465.3
MONOCYTES_8
464.0
MONOCYTES_9
463.6
MONOCYTES_10
461.9
MONOCYTES_11
460.3
MONOCYTES_12
459.2
MONOCYTES_13
459.1
MONOCYTES_14
457.1
MONOCYTES_15
454.0
MONOCYTES_16
446.8
MONOCYTES_17
445.7
MONOCYTES_18
443.2
MONOCYTES_19
443.1
MONOCYTES_20
443.1
MONOCYTES_21
442.2
MONOCYTES_22
441.3
MONOCYTES_23
440.6
MONOCYTES_24
440.5
MONOCYTES_25
438.8
MONOCYTES_26
432.7
MONOCYTES_27
432.3
MONOCYTES_28
429.9
MONOCYTES_29
428.9
MONOCYTES_30
428.5
MONOCYTES_31
428.1
MONOCYTES_32
427.6
MONOCYTES_33
425.9
MONOCYTES_34
422.9
MONOCYTES_35
421.1
MONOCYTES_36
420.4
MONOCYTES_37
419.2
MONOCYTES_38
419.0
MONOCYTES_39
418.3
MONOCYTES_40
417.3
MONOCYTES_41
415.8
MONOCYTES_42
414.7
MONOCYTES_43
414.6
MONOCYTES_44
412.8
MONOCYTES_45
411.1
MONOCYTES_46
409.6
MONOCYTES_47
409.2
MONOCYTES_48
405.7
MONOCYTES_49
403.4
MONOCYTES_50
403.4
MONOCYTES_51
403.2
MONOCYTES_52
402.8
MONOCYTES_53
401.8
MONOCYTES_54
400.8
MONOCYTES_55
400.1
MONOCYTES_56
399.8
MONOCYTES_57
397.1
MONOCYTES_58
396.5
MONOCYTES_59
392.7
MONOCYTES_60
391.3
MONOCYTES_61
390.8
MONOCYTES_62
390.4
MONOCYTES_63
389.9
MONOCYTES_64
387.9
MONOCYTES_65
386.8
MONOCYTES_66
381.8
MONOCYTES_67
380.8
MONOCYTES_68
380.3
MONOCYTES_69
378.1
MONOCYTES_70
377.0
MONOCYTES_71
376.0
MONOCYTES_72
374.9
MONOCYTES_73
372.0
MONOCYTES_74
370.4
MONOCYTES_75
369.6
MONOCYTES_76
367.9
MONOCYTES_77
364.6
MONOCYTES_78
364.6
MONOCYTES_79
360.0
MONOCYTES_80
358.7
MONOCYTES_81
356.4
MONOCYTES_82
353.4
MONOCYTES_83
353.1
MONOCYTES_84
352.6
MONOCYTES_85
350.8
MONOCYTES_86
346.8
MONOCYTES_87
344.4
MONOCYTES_88
342.8
MONOCYTES_89
334.4
MONOCYTES_90
332.2
MONOCYTES_91
320.1
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Non-classical monocyte TPM: 341.5
Samples: 90
Max TPM: 466.2
Min TPM: 253.6
M2_1
466.2
M2_2
448.0
M2_3
433.3
M2_4
423.3
M2_5
420.7
M2_6
405.9
M2_7
405.8
M2_8
398.6
M2_9
398.6
M2_10
391.4
M2_11
389.9
M2_12
387.5
M2_13
386.6
M2_14
384.4
M2_15
380.7
M2_16
380.6
M2_17
380.3
M2_18
379.3
M2_19
376.7
M2_20
374.8
M2_21
374.4
M2_22
373.0
M2_23
372.7
M2_24
368.3
M2_25
366.8
M2_26
364.1
M2_27
363.4
M2_28
359.4
M2_29
358.2
M2_30
357.9
M2_31
356.4
M2_32
352.5
M2_33
350.5
M2_34
349.5
M2_35
348.9
M2_36
347.9
M2_37
346.8
M2_38
344.9
M2_39
344.1
M2_40
341.9
M2_41
341.4
M2_42
341.0
M2_43
340.5
M2_44
340.2
M2_45
339.7
M2_46
337.2
M2_47
335.7
M2_48
335.2
M2_49
334.1
M2_50
333.3
M2_51
333.0
M2_52
332.7
M2_53
331.2
M2_54
329.2
M2_55
327.5
M2_56
327.1
M2_57
323.9
M2_58
320.0
M2_59
319.1
M2_60
318.6
M2_61
317.4
M2_62
317.3
M2_63
315.9
M2_64
314.5
M2_65
312.2
M2_66
311.9
M2_67
311.6
M2_68
311.3
M2_69
309.5
M2_70
309.2
M2_71
309.1
M2_72
307.8
M2_73
307.6
M2_74
305.9
M2_75
304.5
M2_76
303.7
M2_77
300.4
M2_78
297.9
M2_79
297.8
M2_80
294.8
M2_81
294.3
M2_82
293.4
M2_83
290.6
M2_84
284.0
M2_85
283.7
M2_86
283.4
M2_87
270.0
M2_88
268.1
M2_89
261.2
M2_90
253.6
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