A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1566.2
nTPM
Monaco:
193.7
nTPM
Schmiedel:
386.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1566.2
HPA sample
nTPM
NK-cell nTPM: 1566.2
Samples: 6
Max nTPM: 1961.9
Min nTPM: 790.5
P10809_1013
1504.1
P10809_1033
1828.2
P10809_1052
1566.9
P10809_1071
1961.9
P10809_1093
790.5
P10809_1103
1745.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
193.7
Monaco sample
nTPM
NK-cell nTPM: 193.7
Samples: 4
Max nTPM: 219.1
Min nTPM: 167.1
RHH5316_R3683
218.0
RHH5224_R3596
167.1
RHH5253_R3625
219.1
RHH5282_R3654
170.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
386.0
Schmiedel sample id
TPM
NK-cell TPM: 386.0
Samples: 90
Max TPM: 577.6
Min TPM: 254.9
NK_1
577.6
NK_2
574.2
NK_3
562.3
NK_4
497.8
NK_5
488.1
NK_6
487.6
NK_7
487.3
NK_8
470.3
NK_9
466.7
NK_10
466.0
NK_11
457.9
NK_12
455.6
NK_13
450.1
NK_14
446.7
NK_15
444.3
NK_16
442.9
NK_17
440.6
NK_18
438.2
NK_19
437.5
NK_20
431.0
NK_21
429.2
NK_22
421.4
NK_23
421.4
NK_24
417.4
NK_25
415.5
NK_26
414.9
NK_27
414.7
NK_28
414.4
NK_29
413.5
NK_30
412.9
NK_31
408.7
NK_32
403.9
NK_33
401.4
NK_34
399.8
NK_35
398.5
NK_36
397.8
NK_37
393.9
NK_38
393.5
NK_39
392.6
NK_40
389.1
NK_41
385.8
NK_42
385.7
NK_43
384.3
NK_44
383.5
NK_45
382.4
NK_46
379.6
NK_47
378.2
NK_48
377.8
NK_49
377.7
NK_50
375.3
NK_51
372.3
NK_52
371.9
NK_53
370.0
NK_54
367.3
NK_55
361.8
NK_56
361.8
NK_57
358.2
NK_58
357.5
NK_59
356.6
NK_60
356.5
NK_61
354.3
NK_62
351.7
NK_63
351.4
NK_64
351.2
NK_65
349.3
NK_66
348.4
NK_67
347.3
NK_68
345.0
NK_69
343.4
NK_70
339.2
NK_71
338.7
NK_72
337.1
NK_73
324.0
NK_74
323.4
NK_75
321.3
NK_76
320.3
NK_77
319.9
NK_78
318.2
NK_79
313.4
NK_80
311.0
NK_81
310.0
NK_82
309.6
NK_83
303.4
NK_84
293.5
NK_85
292.4
NK_86
290.5
NK_87
288.7
NK_88
286.4
NK_89
277.5
NK_90
254.9
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