MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:853.8 nTPM
HPA Brain:319.0 nTPM
GTEx:853.8 nTPM
FANTOM5:83.8 Scaled Tags Per Million
Mouse:248.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 319.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 286.9
2586 Male, age 75, left hemisphere 325.8
2666 Male, age 74, left hemisphere 305.2
2828 Female, age 72, unknown 295.2
2411 Female, age 72, unknown 290.6
2019 Male, age 18, unknown 290.3
1870 Female, age 42, unknown 281.6
1830 Male, age 51, unknown 279.8
1833 Male, age 53, unknown 276.5
1827 Male, age 72, unknown 274.1
2219 Male, age 76, both hemispheres 249.8
Dorsal raphe nucleus
nTPM: 276.1
2750 Male, age 76, both hemispheres 296.5
2298 Female, age 72, unknown 295.8
2016 Female, age 72, unknown 281.2
1828 Male, age 53, unknown 254.5
2047 Male, age 72, unknown 252.5
Inferior colliculus
nTPM: 263.0
2097 Female, age 72, unknown 272.0
1890 Male, age 53, unknown 270.7
2849 Male, age 72, unknown 258.4
1848 Female, age 42, unknown 250.8
Median raphe nucleus
nTPM: 300.1
2220 Male, age 76, midline 300.1
Periaquaductal grey, anterior
nTPM: 305.0
2502 Female, age 75, unknown 359.4
1795 Male, age 51, unknown 295.2
1947 Male, age 18, unknown 260.3
Periaquaductal grey, dorsal
nTPM: 261.4
2850 Male, age 76, both hemispheres 266.5
1840 Male, age 53, unknown 265.6
1831 Male, age 72, unknown 263.0
2464 Female, age 72, unknown 250.5
Periaquaductal grey, lateral
nTPM: 259.6
2272 Male, age 74, both hemispheres 261.7
2053 Male, age 18, unknown 260.5
2140 Male, age 76, both hemispheres 256.7
Pretectal area
nTPM: 272.8
1815 Male, age 53, unknown 300.2
1817 Female, age 42, unknown 287.6
1816 Male, age 51, unknown 283.2
2407 Male, age 75, both hemispheres 276.7
2007 Male, age 72, unknown 275.2
2273 Male, age 74, both hemispheres 270.4
2224 Female, age 72, unknown 269.8
2825 Male, age 18, unknown 268.5
2316 Male, age 76, right hemisphere 267.3
1944 Female, age 72, unknown 254.6
2667 Female, age 75, unknown 247.3
Red nucleus
nTPM: 303.8
2503 Female, age 72, unknown 355.5
1865 Male, age 51, unknown 343.7
1904 Male, age 53, unknown 327.8
2785 Male, age 18, unknown 313.0
2227 Male, age 72, unknown 305.4
2769 Male, age 72, unknown 303.8
2584 Male, age 75, left hemisphere 303.7
2588 Male, age 74, left hemisphere 296.6
1821 Female, age 72, unknown 294.5
2725 Female, age 75, unknown 275.5
1954 Female, age 42, unknown 268.9
2823 Male, age 76, right hemisphere 257.8
Substantia nigra
nTPM: 319.0
2699 Male, age 18, unknown 377.2
1851 Male, age 51, unknown 363.9
2665 Male, age 74, both hemispheres 350.9
1916 Female, age 42, unknown 338.5
2409 Female, age 72, unknown 336.3
2241 Male, age 72, unknown 312.8
2590 Female, age 75, unknown 303.0
1889 Female, age 72, unknown 282.4
1941 Male, age 53, unknown 272.7
2583 Male, age 75, right hemisphere 252.5
Superior colliculus
nTPM: 294.6
1995 Male, age 72, unknown 333.2
2587 Male, age 74, left hemisphere 332.0
1913 Female, age 42, unknown 326.4
1796 Male, age 53, unknown 316.8
2668 Female, age 75, unknown 311.3
2664 Male, age 75, both hemispheres 289.5
2261 Male, age 18, unknown 275.1
2087 Female, age 72, unknown 261.4
1839 Male, age 51, unknown 258.5
1895 Male, age 76, right hemisphere 241.5
Ventral tegmental area
nTPM: 313.7
1915 Female, age 42, unknown 350.3
2223 Female, age 72, unknown 349.4
2410 Female, age 72, unknown 311.0
2021 Male, age 53, unknown 300.5
2218 Male, age 76, both hemispheres 297.8
1942 Male, age 51, unknown 273.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 853.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 853.8
Samples: 183

Max nTPM: 2080.6
Min nTPM: 383.5
Std nTPM: 301.6
Median nTPM: 788.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2080.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1905.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1826.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1782.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1655.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1595.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1546.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1486.5
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 1445.3
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1431.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1400.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.8
FF:10158-103A5 76 years, female 83.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 248.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 248.7
Samples: 4

Max nTPM: 286.6
Min nTPM: 223.5
Sample A Male 286.6
Sample B Male 223.5
Sample C Female 228.7
Sample D Female 256.1

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