On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
893.6
nTPM
HPA Brain:
451.3
nTPM
GTEx:
893.6
nTPM
FANTOM5:
68.1
Scaled Tags Per Million
Mouse:
202.7
nTPM
Rat:
119.0
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
14181
Sample
Intensity
Spinal cord_01
28683
Spinal cord_02
27453
Spinal cord_03
13304
Spinal cord_04
16249
Spinal cord_05
15058
Spinal cord_06
7385
Spinal cord_07
11031
Spinal cord_08
3165
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
451.3
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 391.4
2193
Male, age 75, both hemispheres
429.2
2819
Male, age 47, both hemispheres
405.4
2734
Male, age 80, both hemispheres
374.0
2818
Female, age 79, both hemispheres
357.1
Cervical spinal cord, central gray nTPM: 344.6
1981
Female, age 72, midline
423.4
2565
Male, age 75, midline
422.2
2048
Male, age 55, midline
310.6
2194
Female, age 79, both hemispheres
307.2
2816
Male, age 47, midline
259.8
Cervical spinal cord, dorsal horn nTPM: 376.2
2069
Male, age 47, both hemispheres
479.6
2296
Male, age 66, both hemispheres
442.5
2173
Female, age 72, unknown
432.3
1877
Male, age 55, unknown
354.3
2721
Male, age 90, both hemispheres
280.7
2297
Male, age 75, both hemispheres
267.8
Cervical spinal cord, ventral horn nTPM: 441.8
2480
Male, age 75, both hemispheres
605.5
2809
Male, age 90, both hemispheres
537.2
2098
Female, age 72, unknown
520.4
2295
Male, age 66, both hemispheres
377.9
2068
Male, age 55, unknown
374.8
2820
Female, age 79, both hemispheres
234.8
Dorsal funiculus (white matter) nTPM: 378.1
2810
Male, age 90, both hemispheres
402.9
2128
Male, age 75, both hemispheres
393.6
2064
Female, age 79, both hemispheres
391.8
2817
Male, age 47, both hemispheres
362.1
2812
Male, age 66, both hemispheres
340.1
Lateral funiculus (white matter) nTPM: 451.3
2294
Male, age 66, both hemispheres
463.4
2192
Male, age 75, both hemispheres
460.0
2094
Female, age 79, both hemispheres
448.2
2099
Male, age 90, both hemispheres
433.6
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
893.6
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 893.6
Samples: 204
Max nTPM: 2055.8
Min nTPM: 381.0
Std nTPM: 253.0
Median nTPM: 873.5
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
2055.8
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
1791.2
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
1609.0
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
1528.9
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
1493.9
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
1393.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
1372.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
1364.3
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
1361.3
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
1330.4
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
1326.5
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
1317.4
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
1310.7
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
1308.2
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
1270.5
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
1266.1
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
1251.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
1236.6
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
1233.2
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
1224.5
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
1208.4
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
1207.4
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
1205.3
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
1191.8
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
1184.1
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
1166.3
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
1158.7
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
1156.2
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
1149.8
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
1147.6
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
1147.3
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
1140.4
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
1134.7
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
1127.3
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
1125.6
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
1104.0
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
1103.2
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
1099.7
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
1098.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
1096.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
1083.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
1077.9
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
1068.0
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
1067.9
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
1060.1
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
1058.2
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
1057.4
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
1056.8
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
1052.3
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
1048.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
1045.6
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
1026.2
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
1024.8
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
1022.6
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
1022.2
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
1014.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
1011.3
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
1011.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
1001.3
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
998.6
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
991.5
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
990.0
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
982.8
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
982.2
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
980.3
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
979.4
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
978.0
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
974.4
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
971.6
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
971.5
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
968.5
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
967.7
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
964.9
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
960.8
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
953.5
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
951.9
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
949.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
942.1
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
940.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
940.1
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
939.5
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
938.9
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
930.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
927.5
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
926.0
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
923.8
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
923.7
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
919.7
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
916.4
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
916.1
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
914.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
913.6
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
909.8
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
909.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
906.4
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
897.4
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
893.6
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
890.0
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
883.6
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
879.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
876.8
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
874.6
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
872.4
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
867.0
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
866.7
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
858.8
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
858.2
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
851.9
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
847.0
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
846.9
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
846.6
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
845.0
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
843.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
841.1
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
828.1
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
827.0
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
826.8
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
825.6
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
817.9
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
814.4
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
808.9
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
805.5
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
799.6
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
797.9
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
796.3
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
795.5
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
794.3
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
784.7
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
782.6
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
782.3
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
780.4
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
779.3
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
773.7
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
770.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
769.7
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
764.0
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
761.8
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
760.2
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
752.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
749.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
746.0
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
745.1
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
742.7
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
739.5
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
737.5
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
731.6
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
727.9
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
726.0
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
719.3
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
715.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
714.6
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
709.8
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
703.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
691.7
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
691.3
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
690.2
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
689.9
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
687.7
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
687.6
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
683.3
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
674.1
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
664.1
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
663.4
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
660.3
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
660.0
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
658.2
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
656.4
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
653.6
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
652.1
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
648.7
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
647.2
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
639.5
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
636.4
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
631.3
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
630.3
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
629.5
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
629.4
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
628.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
627.4
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
626.4
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
624.9
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
620.8
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
614.2
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
608.4
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
603.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
596.5
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
587.9
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
584.8
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
582.0
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
577.5
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
576.3
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
574.1
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
572.5
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
547.3
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
539.0
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
525.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
525.3
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
521.6
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
507.0
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
503.2
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
502.2
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
476.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
389.5
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
381.0
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
202.7
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 202.7
Samples: 4
Max nTPM: 210.4
Min nTPM: 197.2
Sample A
197.2
Sample B
205.1
Sample C
210.4
Sample D
198.2
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
119.0
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 119.0
Samples: 4
Max nTPM: 124.4
Min nTPM: 114.5
Sample A
124.4
Sample A
115.5
Sample A
121.6
Sample A
114.5
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The Human Protein Atlas project is funded
